Domain ID e1y9dC6

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: DHS-like NAD/FAD-binding domain
  • F: TPP_enzyme_M
UID: 001170933
Type: Automatic domain
Parent: e2ez9A1
Range: C:183-365
Ligands: FAD
PDB: 1y9d
PDB Description: Pyruvate oxidase
UniProt: P37063
Hsap BLAST neighbor: Q9UJ83
Species: Lactobacillus plantarum

Structure of domain e1y9dC6

Domains in the same chain:

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e1y9dC5 C:9-182 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1y9dC6 C:183-365 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e1y9dC4 C:366-593 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)

Domains in the same PDB:

e1y9dA2 A:9-182 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1y9dA3 A:150-158,A:192-365 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e1y9dA1 A:366-593 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1y9dB3 B:9-182 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1y9dB5 B:183-365 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e1y9dB4 B:366-597 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1y9dC5 C:9-182 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1y9dC6 C:183-365 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e1y9dC4 C:366-593 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1y9dD5 D:9-182 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1y9dD6 D:183-365 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e1y9dD4 D:366-593 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)

Structural contacts of domain e1y9dC6 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1y9dD6 C:X,Y,Z->D:x,y,z Rossmann-related Interaction Interface Pymol
e1y9dD5 C:X,Y,Z->D:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e1y9dB5 C:x,y,z->B:X-1,Y,Z Rossmann-related Interaction Interface Pymol
e1y9dD4 C:x,y,z->D:-X,Y-1/2,-Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol