Domain ID e1yaeD1

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  • A: a/b three-layered sandwiches
  • X: Periplasmic binding protein-like II
  • H: Periplasmic binding protein-like II
  • T: Periplasmic binding protein-like II
  • F: Lig_chan-Glu_bd
UID: 001523293
Type: Automatic domain
Parent: e1mqiA3
Range: D:423-535,D:763-804
Ligands: DOQ NAG
PDB: 1yae
PDB Description: Glutamate receptor, ionotropic kainate 2
UniProt: P42260
Hsap BLAST neighbor: Q13002
Species: Rattus norvegicus

Structure of domain e1yaeD1

Domains in the same chain:

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e1yaeD1 D:423-535,D:763-804 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e1yaeD2 D:536-544,D:668-762 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II

Domains in the same PDB:

e1yaeA1 A:421-535,A:763-804 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e1yaeA2 A:536-544,A:668-762 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e1yaeB2 B:423-535,B:763-804 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e1yaeB3 B:536-546,B:668-762 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e1yaeC2 C:423-535,C:763-802 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e1yaeC3 C:536-545,C:669-762 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e1yaeD1 D:423-535,D:763-804 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e1yaeD2 D:536-544,D:668-762 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e1yaeE2 E:423-535,E:763-801 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e1yaeE3 E:536-545,E:668-762 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e1yaeF1 F:423-535,F:763-800 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e1yaeF2 F:536-542,F:680-762 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II

Structural contacts of domain e1yaeD1 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1yaeB2 D:x,y,z->B:X,Y,Z Periplasmic binding protein-like II Interaction Interface Pymol
e1yaeB2 D:x,y,z->B:X,Y,Z Periplasmic binding protein-like II Interaction Interface Pymol
e1yaeD1 D:x,y,z->D:-X,Y,-Z+1 Periplasmic binding protein-like II Interaction Interface Pymol
e1yaeD1 D:-X,Y,-Z+1->D:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e1yaeF1 D:X,Y,Z->F:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol