Domain ID e1ybdB1

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  • A: a/b three-layered sandwiches
  • X: Carbamate kinase-like
  • H: Carbamate kinase-like
  • T: Carbamate kinase-like
  • F: AA_kinase
UID: 000109249
Type: Automatic domain
Parent: e1e19A1
Range: B:6-240
Ligands: GOL
PDB: 1ybd
PDB Description: Uridylate kinase
UniProt: P65932
Species: Neisseria meningitidis

Structure of domain e1ybdB1

Structural contacts of domain e1ybdB1 of H-group "Carbamate kinase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1ybdB1 B:x,y,z->B:X-Y+1,-Y+2,-Z+1 Carbamate kinase-like Interaction Interface Pymol
e1ybdB1 B:X-Y+1,-Y+2,-Z+1->B:x,y,z Carbamate kinase-like Interaction Interface Pymol
e1ybdB1 B:x,y,z->B:-X+2,-X+Y+1,-Z+1 Carbamate kinase-like Interaction Interface Pymol
e1ybdB1 B:-X+2,-X+Y+1,-Z+1->B:x,y,z Carbamate kinase-like Interaction Interface Pymol
e1ybdA1 B:x,y,z->A:X,Y,Z Carbamate kinase-like Interaction Interface Pymol
e1ybdB1 B:x,y,z->B:-Y+2,X-Y+1,Z Carbamate kinase-like Interaction Interface Pymol
e1ybdB1 B:-Y+2,X-Y+1,Z->B:x,y,z Carbamate kinase-like Interaction Interface Pymol
e1ybdB1 B:x,y,z->B:X-Y+1,-Y+2,-Z Carbamate kinase-like Interaction Interface Pymol
e1ybdB1 B:X-Y+1,-Y+2,-Z->B:x,y,z Carbamate kinase-like Interaction Interface Pymol
e1ybdB1 B:x,y,z->B:Y,X,-Z+1 Carbamate kinase-like Interaction Interface Pymol
e1ybdB1 B:Y,X,-Z+1->B:x,y,z Carbamate kinase-like Interaction Interface Pymol
e1ybdB1 B:x,y,z->B:-X+2,-X+Y+1,-Z Carbamate kinase-like Interaction Interface Pymol
e1ybdB1 B:-X+2,-X+Y+1,-Z->B:x,y,z Carbamate kinase-like Interaction Interface Pymol