| UID: | 000026987 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1kwaA1 |
| Range: | B:197-272 |
| PDB: | 1ybo |
| PDB Description: | Syntenin 1 |
| UniProt: | O00560 |
| Hsap BLAST neighbor: | O00560 |
| Species: | Homo sapiens |
Structure of domain e1yboB1
Domains in the same chain:
| e1yboB2 | B:110-194 | PDZ domain | PDZ domain | PDZ domain |
| e1yboB1 | B:197-272 | PDZ domain | PDZ domain | PDZ domain |
Domains in the same PDB:
| e1yboA2 | A:111-194 | PDZ domain | PDZ domain | PDZ domain |
| e1yboA1 | A:197-273 | PDZ domain | PDZ domain | PDZ domain |
| e1yboB2 | B:110-194 | PDZ domain | PDZ domain | PDZ domain |
| e1yboB1 | B:197-272 | PDZ domain | PDZ domain | PDZ domain |
Structural contacts of domain e1yboB1 of H-group "PDZ domain":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e1yboA2 | B:x,y,z->A:X,Y,Z | PDZ domain | Interaction Interface Pymol |
| e1yboA2 | B:x,y,z->A:X-1/2,-Y+3/2,-Z+3/4 | PDZ domain | Interaction Interface Pymol |
| e1yboB1 | B:x,y,z->B:-Y+1,-X+1,-Z+1/2 | PDZ domain | Interaction Interface Pymol |
| e1yboB1 | B:-Y+1,-X+1,-Z+1/2->B:x,y,z | PDZ domain | Interaction Interface Pymol |
| e1yboA2 | B:x,y,z->A:-Y+1,-X+2,-Z+1/2 | PDZ domain | Interaction Interface Pymol |
| e1yboA1 | B:-Y+3/2,X-1/2,Z+1/4->A:x,y,z | PDZ domain | Interaction Interface Pymol |
