ECOD: domain e1ydxA1

Domain ID e1ydxA1

A: a+b complex topology
X: DNA methylase specificity domain
H: DNA methylase specificity domain
T: DNA methylase specificity domain
F: Methylase_S

UID:	000007666
Type:	Manual and representative domain
Range:	A:1-193
Ligands:	CL
PDB:	1ydx
PDB Description:	TYPE I RESTRICTION ENZYME SPECIFICITY PROTEIN MG438
UniProt:	Q49434
Species:	Mycoplasma genitalium

Domains in the same chain:

Download Pymol

e1ydxA1	A:1-193	DNA methylase specificity domain	DNA methylase specificity domain	DNA methylase specificity domain
e1ydxA2	A:194-374	DNA methylase specificity domain	DNA methylase specificity domain	DNA methylase specificity domain

Domains in the same PDB:

e1ydxA1	A:1-193	DNA methylase specificity domain	DNA methylase specificity domain	DNA methylase specificity domain
e1ydxA2	A:194-374	DNA methylase specificity domain	DNA methylase specificity domain	DNA methylase specificity domain

Structural contacts of domain e1ydxA1 of H-group "DNA methylase specificity domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1ydxA2	A:x,y,z->A:Y,X,-Z	DNA methylase specificity domain	Interaction Interface Pymol
e1ydxA1	A:x,y,z->A:Y,X,-Z	DNA methylase specificity domain	Interaction Interface Pymol
e1ydxA1	A:Y,X,-Z->A:x,y,z	DNA methylase specificity domain	Interaction Interface Pymol
e1ydxA2	A:Y,X,-Z->A:x,y,z	DNA methylase specificity domain	Interaction Interface Pymol
e1ydxA2	A:-X+1,-X+Y,-Z+1/3->A:x,y,z	DNA methylase specificity domain	Interaction Interface Pymol
e1ydxA1	A:x,y,z->A:Y-1,X,-Z	DNA methylase specificity domain	Interaction Interface Pymol
e1ydxA1	A:Y-1,X,-Z->A:x,y,z	DNA methylase specificity domain	Interaction Interface Pymol
e1ydxA2	A:-Y+2,X-Y+1,Z+1/3->A:x,y,z	DNA methylase specificity domain	Interaction Interface Pymol