| UID: | 000008789 |
|---|---|
| Type: | Manual and representative domain |
| Range: | A:29-356 |
| Ligands: | CA GOL |
| PDB: | 1ydy |
| PDB Description: | Glycerophosphoryl diester phosphodiesterase |
| UniProt: | P09394 |
| Hsap BLAST neighbor: | Q9HCC8 |
| Species: | Escherichia coli |
Structure of domain e1ydyA1
Domains in the same chain:
| e1ydyA1 | A:29-356 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
Domains in the same PDB:
| e1ydyA1 | A:29-356 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
| e1ydyB1 | B:29-356 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
Structural contacts of domain e1ydyA1 of H-group "TIM barrels":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e1ydyB1 | A:X,Y,Z->B:x,y,z | TIM barrels | Interaction Interface Pymol |
| e1ydyB1 | A:-X+1/2,-Y,Z-1/2->B:x,y,z | TIM barrels | Interaction Interface Pymol |
| e1ydyB1 | A:x,y,z->B:X-1/2,-Y+1/2,-Z | TIM barrels | Interaction Interface Pymol |
| e1ydyA1 | A:x,y,z->A:-X,Y-1/2,-Z+1/2 | TIM barrels | Interaction Interface Pymol |
| e1ydyA1 | A:-X,Y-1/2,-Z+1/2->A:x,y,z | TIM barrels | Interaction Interface Pymol |
