ECOD: domain e1ydyA1

Domain ID e1ydyA1

A: a/b barrels
X: TIM beta/alpha-barrel
H: TIM barrels
T: TIM barrels
F: GDPD

UID:	000008789
Type:	Manual and representative domain
Range:	A:29-356
Ligands:	CA GOL
PDB:	1ydy
PDB Description:	Glycerophosphoryl diester phosphodiesterase
UniProt:	P09394
Hsap BLAST neighbor:	Q9HCC8
Species:	Escherichia coli

Structural contacts of domain e1ydyA1 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1ydyB1	A:X,Y,Z->B:x,y,z	TIM barrels	Interaction Interface Pymol
e1ydyB1	A:-X+1/2,-Y,Z-1/2->B:x,y,z	TIM barrels	Interaction Interface Pymol
e1ydyB1	A:x,y,z->B:X-1/2,-Y+1/2,-Z	TIM barrels	Interaction Interface Pymol
e1ydyA1	A:x,y,z->A:-X,Y-1/2,-Z+1/2	TIM barrels	Interaction Interface Pymol
e1ydyA1	A:-X,Y-1/2,-Z+1/2->A:x,y,z	TIM barrels	Interaction Interface Pymol

e1ydyA1	A:29-356	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e1ydyB1	B:29-356	TIM beta/alpha-barrel	TIM barrels	TIM barrels