ECOD: domain e1yfsA1

Domain ID e1yfsA1

A: alpha complex topology
X: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
H: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
T: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
F: tRNA-synt_2c

UID:	000062290
Type:	Automatic domain
Parent:	e1riqA1
Range:	A:237-457
PDB:	1yfs
PDB Description:	ALANYL-TRNA SYNTHETASE
UniProt:	O67323
Hsap BLAST neighbor:	P49588
Species:	Aquifex aeolicus

Domains in the same chain:

Download Pymol

e1yfsA2	A:1-236	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e1yfsA1	A:237-457	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)

Domains in the same PDB:

e1yfsA2	A:1-236	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e1yfsA1	A:237-457	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
e1yfsB2	B:1-236	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e1yfsB1	B:237-457	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)

Structural contacts of domain e1yfsA1 of H-group "Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1yfsB2	A:-X+3/2,-Y,Z-1/2->B:x,y,z	Class II aaRS and biotin synthetases	Interaction Interface Pymol
e1yfsA2	A:x,y,z->A:-X+3/2,-Y,Z-1/2	Class II aaRS and biotin synthetases	Interaction Interface Pymol
e1yfsA1	A:x,y,z->A:-X+3/2,-Y,Z-1/2	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	Interaction Interface Pymol
e1yfsA1	A:-X+3/2,-Y,Z-1/2->A:x,y,z	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	Interaction Interface Pymol
e1yfsB2	A:X-1/2,-Y-1/2,-Z->B:x,y,z	Class II aaRS and biotin synthetases	Interaction Interface Pymol
e1yfsB1	A:X,Y,Z->B:x,y,z	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	Interaction Interface Pymol