Domain ID e1ygkA1

Download files:
  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Ribokinase-like
  • T: Ribokinase-like
  • F: Phos_pyr_kin
UID: 000100676
Type: Automatic domain
Parent: e1lhpA1
Range: A:4-312
Ligands: RRC
PDB: 1ygk
PDB Description: Pyridoxal kinase
UniProt: P82197
Hsap BLAST neighbor: O00764
Species: Ovis aries

Structure of domain e1ygkA1

Domains in the same chain:

e1ygkA1 A:4-312 Rossmann-like Ribokinase-like Ribokinase-like

Domains in the same PDB:

e1ygkA1 A:4-312 Rossmann-like Ribokinase-like Ribokinase-like

Structural contacts of domain e1ygkA1 of H-group "Ribokinase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1ygkA1 A:x,y,z->A:-X,-X+Y,-Z+1/3 Ribokinase-like Interaction Interface Pymol
e1ygkA1 A:-X,-X+Y,-Z+1/3->A:x,y,z Ribokinase-like Interaction Interface Pymol
e1ygkA1 A:x,y,z->A:-Y+1,X-Y+1,Z+1/3 Ribokinase-like Interaction Interface Pymol
e1ygkA1 A:-Y+1,X-Y+1,Z+1/3->A:x,y,z Ribokinase-like Interaction Interface Pymol
e1ygkA1 A:x,y,z->A:-X,-X+Y,-Z+4/3 Ribokinase-like Interaction Interface Pymol
e1ygkA1 A:-X,-X+Y,-Z+4/3->A:x,y,z Ribokinase-like Interaction Interface Pymol
e1ygkA1 A:x,y,z->A:X-Y,-Y+1,-Z+2/3 Ribokinase-like Interaction Interface Pymol
e1ygkA1 A:X-Y,-Y+1,-Z+2/3->A:x,y,z Ribokinase-like Interaction Interface Pymol
e1ygkA1 A:x,y,z->A:X,Y,Z-1 Ribokinase-like Interaction Interface Pymol
e1ygkA1 A:X,Y,Z-1->A:x,y,z Ribokinase-like Interaction Interface Pymol