Domain ID e1yntD1

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  • A: beta sandwiches
  • X: Immunoglobulin-like beta-sandwich
  • H: Immunoglobulin-related
  • T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like
  • F: C1-set
UID: 000037266
Type: Automatic domain
Parent: e1mjuH2
Range: D:1619-1718
Ligands: CD
PDB: 1ynt
PDB Description: 4F11E12 Fab variable heavy chain region
Hsap BLAST neighbor: P01859
Species: Mus musculus

Structure of domain e1yntD1

Domains in the same chain:

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e1yntD2 D:1501-1618 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yntD1 D:1619-1718 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Domains in the same PDB:

e1yntA1 A:1-108 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yntA2 A:109-213 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yntB2 B:501-618 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yntB1 B:619-718 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yntC1 C:1001-1108 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yntC2 C:1109-1213 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yntD2 D:1501-1618 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yntD1 D:1619-1718 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yntE1 E:820-880 beta-Grasp Immunoglobulin-binding domains Immunoglobulin-binding domains
e1yntF1 F:2003-2131 Cupredoxin-like Surface antigen 1 (SAG1)-related-sequence (SRS) family Surface antigen 1 (SAG1)-related-sequence (SRS) family
e1yntF2 F:2132-2254 Cupredoxin-like Surface antigen 1 (SAG1)-related-sequence (SRS) family Surface antigen 1 (SAG1)-related-sequence (SRS) family
e1yntG1 G:3003-3131 Cupredoxin-like Surface antigen 1 (SAG1)-related-sequence (SRS) family Surface antigen 1 (SAG1)-related-sequence (SRS) family
e1yntG2 G:3132-3254 Cupredoxin-like Surface antigen 1 (SAG1)-related-sequence (SRS) family Surface antigen 1 (SAG1)-related-sequence (SRS) family

Structural contacts of domain e1yntD1 of H-group "Immunoglobulin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1yntC2 D:x,y,z->C:X,Y,Z Immunoglobulin-related Interaction Interface Pymol
e1yntD2 D:x,y,z->D:-X,Y,-Z+1 Immunoglobulin-related Interaction Interface Pymol
e1yntD1 D:x,y,z->D:-X,Y,-Z+1 Immunoglobulin-related Interaction Interface Pymol
e1yntD2 D:-X,Y,-Z+1->D:x,y,z Immunoglobulin-related Interaction Interface Pymol
e1yntD1 D:-X,Y,-Z+1->D:x,y,z Immunoglobulin-related Interaction Interface Pymol
e1yntB1 D:x,y,z->B:-X+1/2,Y-1/2,-Z+1 Immunoglobulin-related Interaction Interface Pymol
e1yntC1 D:x,y,z->C:-X,Y,-Z+1 Immunoglobulin-related Interaction Interface Pymol
e1yntC2 D:x,y,z->C:-X,Y,-Z+1 Immunoglobulin-related Interaction Interface Pymol
e1yntC2 D:x,y,z->C:-X+1,Y,-Z+1 Immunoglobulin-related Interaction Interface Pymol