Domain ID e1yovB4

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: Activating enzymes of the ubiquitin-like proteins
  • F: ThiF
UID: 001870426
Type: Manual and representative domain
Range: B:12-210,B:289-346
Ligands: ZN
PDB: 1yov
PDB Description: Ubiquitin-activating enzyme E1C
UniProt: Q8TBC4
Hsap BLAST neighbor: Q8TBC4
Species: Homo sapiens

Structure of domain e1yovB4

Domains in the same chain:

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e1yovB4 B:12-210,B:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1yovB3 B:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e1yovB1 B:347-437 beta-Grasp E2-binding domain of E1 E2-binding domain of E1

Domains in the same PDB:

e1yovA3 A:6-171,A:391-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1yovA2 A:172-390 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e1yovB4 B:12-210,B:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1yovB3 B:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e1yovB1 B:347-437 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e1yovC1 C:9-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1yovD2 D:19-210,D:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1yovD3 D:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e1yovD4 D:347-401,D:425-436 beta-Grasp E2-binding domain of E1 E2-binding domain of E1

Structural contacts of domain e1yovB4 of H-group "Rossmann-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1yovA3 B:x,y,z->A:X,Y,Z Rossmann-related Interaction Interface Pymol
e1yovA2 B:x,y,z->A:X,Y,Z Catalytic cysteine domain in ubiquitin-activating enzyme Interaction Interface Pymol
e1yovD2 B:X,Y,Z->D:x,y,z Rossmann-related Interaction Interface Pymol
e1yovA2 B:x,y,z->A:X-1/2,-Y+1/2,-Z+1 Catalytic cysteine domain in ubiquitin-activating enzyme Interaction Interface Pymol
e1yovA2 B:X-1/2,-Y+1/2,-Z+1->A:x,y,z Catalytic cysteine domain in ubiquitin-activating enzyme Interaction Interface Pymol
e1yovC1 B:-X+1,Y-1/2,-Z+1/2->C:x,y,z Rossmann-related Interaction Interface Pymol