Domain ID e1yq9B2

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  • A: a/b three-layered sandwiches
  • X: Flavodoxin-like
  • H: Class I glutamine amidotransferase-like
  • T: CheY-like
  • F: Oxidored_q6
UID: 000113863
Type: Automatic domain
Parent: e1ublS3
Range: B:5-180
Ligands: H2S SF4
PDB: 1yq9
PDB Description: Periplasmic [NiFe] hydrogenase small subunit
UniProt: P12943
Species: Desulfovibrio gigas

Structure of domain e1yq9B2

Domains in the same chain:

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e1yq9B2 B:5-180 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e1yq9B1 B:181-263 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit

Domains in the same PDB:

e1yq9A2 A:4-180 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e1yq9A1 A:181-263 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e1yq9B2 B:5-180 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e1yq9B1 B:181-263 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e1yq9H3 H:7-42,H:495-535 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1yq9H4 H:43-85,H:446-494 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1yq9H2 H:86-313,H:365-445 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e1yq9H1 H:314-364 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e1yq9I3 I:7-42,I:495-535 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1yq9I4 I:43-85,I:446-494 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1yq9I2 I:86-313,I:365-445 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e1yq9I1 I:314-364 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit

Structural contacts of domain e1yq9B2 of H-group "Class I glutamine amidotransferase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1yq9A1 B:x,y,z->A:X,Y,Z Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Interaction Interface Pymol