Domain ID e1yquB1

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  • A: a/b three-layered sandwiches
  • X: Phosphorylase/hydrolase-like
  • H: Peptidyl-tRNA hydrolase-like
  • T: Peptidyl-tRNA hydrolase-like
  • F: PNP_UDP_1
UID: 001311622
Type: Automatic domain
Parent: e3pnpA1
Range: B:5-239,B:263-277
Ligands: GUN PO4
PDB: 1yqu
PDB Description: XANTHOSINE PHOSPHORYLASE
UniProt: P45563
Hsap BLAST neighbor: P00491
Species: Escherichia coli

Structure of domain e1yquB1

Structural contacts of domain e1yquB1 of H-group "Peptidyl-tRNA hydrolase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1yquC1 B:X,Y,Z->C:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e1yquA1 B:x,y,z->A:X,Y,Z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e1yquB1 B:x,y,z->B:Y-1,X+1,-Z+1 Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e1yquB1 B:Y-1,X+1,-Z+1->B:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e1yquB1 B:x,y,z->B:-X,-X+Y,-Z+2/3 Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e1yquB1 B:-X,-X+Y,-Z+2/3->B:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e1yquA1 B:X,Y-1,Z->A:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e1yquA1 B:X-1,Y-1,Z->A:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol