ECOD: domain e1yrbB1

Domain ID e1yrbB1

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: ATP_bind_1

UID:	000102114
Type:	Automatic domain
Parent:	e1yrbA1
Range:	B:1-244
Ligands:	GDP MG
PDB:	1yrb
PDB Description:	ATP(GTP)binding protein
UniProt:	Q9UYR9
Hsap BLAST neighbor:	Q9HCN4
Species:	Pyrococcus abyssi

Domains in the same chain:

Download Pymol

e1yrbB1	B:1-244	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases

Domains in the same PDB:

e1yrbA1	A:1-244	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1yrbB1	B:1-244	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases

Structural contacts of domain e1yrbB1 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1yrbA1	B:x,y,z->A:X,Y,Z	P-loop domains-related	Interaction Interface Pymol
e1yrbB1	B:x,y,z->B:-X+1,Y-1/2,-Z	P-loop domains-related	Interaction Interface Pymol
e1yrbB1	B:-X+1,Y-1/2,-Z->B:x,y,z	P-loop domains-related	Interaction Interface Pymol
e1yrbA1	B:x,y,z->A:-X,Y-1/2,-Z	P-loop domains-related	Interaction Interface Pymol
e1yrbA1	B:x,y,z->A:X,Y,Z-1	P-loop domains-related	Interaction Interface Pymol