Domain ID e1yylG1

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  • A: a+b two layers
  • X: gp120 inner domain
  • H: gp120 inner domain
  • T: gp120 inner domain
  • F: GP120
UID: 001829835
Type: Automatic domain
Parent: e2nxyA3
Range: G:83-255,G:474-492
Ligands: NAG NDG
PDB: 1yyl
PDB Description: Exterior membrane glycoprotein(GP120),Exterior membrane glycoprotein(GP120),Exterior membrane glycoprotein(GP120)
UniProt: P35961
Species: Human immunodeficiency virus 1

Structure of domain e1yylG1

Domains in the same chain:

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e1yylG1 G:83-255,G:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e1yylG2 G:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain

Domains in the same PDB:

e1yylG1 G:83-255,G:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e1yylG2 G:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e1yylH1 H:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yylH2 H:114-214 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yylL1 L:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yylL2 L:108-212 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yylM1 M:1-27 omega toxin-like omega toxin-related Scorpion toxin-like
e1yylP2 P:1083-1255,P:1474-1492 gp120 inner domain gp120 inner domain gp120 inner domain
e1yylP1 P:1256-1473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e1yylQ1 Q:1001-1107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yylQ2 Q:1108-1212 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yylR1 R:1001-1113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yylR2 R:1114-1214 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yylS1 S:1001-1027 omega toxin-like omega toxin-related Scorpion toxin-like

Structural contacts of domain e1yylG1 of H-group "gp120 inner domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1yylH1 G:X,Y,Z->H:x,y,z Immunoglobulin-related Interaction Interface Pymol
e1yylG2 G:X-1,Y,Z->G:x,y,z Ribosomal protein L31e/gp120 outer domain Interaction Interface Pymol
e1yylH1 G:X-1,Y,Z->H:x,y,z Immunoglobulin-related Interaction Interface Pymol