| UID: | 001878294 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1u04A5 |
| Range: | A:547-770 |
| Ligands: | MN |
| PDB: | 1z25 |
| PDB Description: | Argonaute |
| UniProt: | Q8U3D2 |
| Species: | Pyrococcus furiosus |
Structure of domain e1z25A1
Domains in the same chain:
| e1z25A3 | A:0-18,A:80-151,A:276-323 | Alpha-beta plaits | Argonaute, N-terminal domain | Argonaute, N-terminal domain |
| e1z25A4 | A:19-79 | Alpha-beta plaits | Argonaute, N-terminal domain | Argonaute, N-terminal domain |
| e1z25A5 | A:152-275 | SH3 | SH3 | SH3 |
| e1z25A2 | A:324-413,A:443-546 | Middle domain in Argonaute homologs | Middle domain in Argonaute homologs | Middle domain in Argonaute homologs |
| e1z25A1 | A:547-770 | Ribonuclease H-like | Ribonuclease H-like | Ribonuclease H-like |
Domains in the same PDB:
| e1z25A3 | A:0-18,A:80-151,A:276-323 | Alpha-beta plaits | Argonaute, N-terminal domain | Argonaute, N-terminal domain |
| e1z25A4 | A:19-79 | Alpha-beta plaits | Argonaute, N-terminal domain | Argonaute, N-terminal domain |
| e1z25A5 | A:152-275 | SH3 | SH3 | SH3 |
| e1z25A2 | A:324-413,A:443-546 | Middle domain in Argonaute homologs | Middle domain in Argonaute homologs | Middle domain in Argonaute homologs |
| e1z25A1 | A:547-770 | Ribonuclease H-like | Ribonuclease H-like | Ribonuclease H-like |
Structural contacts of domain e1z25A1 of H-group "Ribonuclease H-like":
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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e1z25A3 | A:X-1,Y,Z->A:x,y,z | Argonaute, N-terminal domain | Interaction Interface Pymol |
| e1z25A5 | A:-X,Y-1/2,-Z+1->A:x,y,z | SH3 | Interaction Interface Pymol |
| e1z25A2 | A:-X+1,Y-1/2,-Z+1->A:x,y,z | Middle domain in Argonaute homologs | Interaction Interface Pymol |
