ECOD: domain e1zyqA1

Domain ID e1zyqA1

A: alpha arrays
X: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
H: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
T: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
F: DNA_pol_A

UID:	000047591
Type:	Automatic domain
Parent:	e2hhvA1
Range:	A:491-613
Ligands:	DAD
PDB:	1zyq
PDB Description:	DNA polymerase
UniProt:	P00581
Species:	Enterobacteria phage T7

Domain
In chain context
In PDB context

Structure of domain e1zyqA1

Domains in the same chain:

Download Pymol

e1zyqA4	A:1-210	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1zyqA2	A:211-462	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e1zyqA3	A:463-490,A:614-703	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e1zyqA1	A:491-613	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e1zyqA4	A:1-210	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1zyqA2	A:211-462	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e1zyqA3	A:463-490,A:614-703	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e1zyqA1	A:491-613	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e1zyqB1	B:3-107	Thioredoxin-like	Thioredoxin-like	Thioredoxin-like

Structural contacts of domain e1zyqA1 of H-group "helical bundle in Bacillus stearothermophilus-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1zyqA3	A:X,Y,Z-1->A:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e1zyqA4	A:x,y,z->A:-X+1,-Y,Z	Ribonuclease H-like	Interaction Interface Pymol
e1zyqA4	A:-X+1,-Y,Z->A:x,y,z	Ribonuclease H-like	Interaction Interface Pymol