Domain ID e2ag6A1

Download files:
  • A: a/b three-layered sandwiches
  • X: HUP domain-like
  • H: HUP domains
  • T: HUP domains
  • F: tRNA-synt_1b
UID: 000160164
Type: Automatic domain
Parent: e1j1uA1
Range: A:1-307
Ligands: 4BF
PDB: 2ag6
PDB Description: Tyrosyl-tRNA synthetase
UniProt: Q57834
Hsap BLAST neighbor: P54577
Species: Methanocaldococcus jannaschii

Structure of domain e2ag6A1

Domains in the same chain:

e2ag6A1 A:1-307 HUP domain-like HUP domains HUP domains

Domains in the same PDB:

e2ag6A1 A:1-307 HUP domain-like HUP domains HUP domains

Structural contacts of domain e2ag6A1 of H-group "HUP domains":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2ag6A1 A:x,y,z->A:-Y+1,-X+1,-Z-1/2 HUP domains Interaction Interface Pymol
e2ag6A1 A:-Y+1,-X+1,-Z-1/2->A:x,y,z HUP domains Interaction Interface Pymol
e2ag6A1 A:x,y,z->A:-Y+1,-X+1,-Z+1/2 HUP domains Interaction Interface Pymol
e2ag6A1 A:-Y+1,-X+1,-Z+1/2->A:x,y,z HUP domains Interaction Interface Pymol
e2ag6A1 A:x,y,z->A:-Y+3/2,X-1/2,Z-1/4 HUP domains Interaction Interface Pymol
e2ag6A1 A:-Y+3/2,X-1/2,Z-1/4->A:x,y,z HUP domains Interaction Interface Pymol
e2ag6A1 A:x,y,z->A:-Y+3/2,X-1/2,Z+3/4 HUP domains Interaction Interface Pymol
e2ag6A1 A:-Y+3/2,X-1/2,Z+3/4->A:x,y,z HUP domains Interaction Interface Pymol
e2ag6A1 A:x,y,z->A:-X+3/2,Y-1/2,-Z-1/4 HUP domains Interaction Interface Pymol
e2ag6A1 A:-X+3/2,Y-1/2,-Z-1/4->A:x,y,z HUP domains Interaction Interface Pymol