Domain ID e2agpB1

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  • A: alpha arrays
  • X: HhH/H2TH
  • H: SAM/DNA-glycosylase
  • T: SAM domain-like
  • F: IMS_HHH
UID: 000048249
Type: Automatic domain
Parent: e1jx4A1
Range: B:177-239
Ligands: MG
PDB: 2agp
PDB Description: DNA polymerase IV
UniProt: Q97W02
Species: Sulfolobus solfataricus

Structure of domain e2agpB1

Domains in the same chain:

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e2agpB3 B:2-20,B:76-176 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2agpB4 B:21-75 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e2agpB1 B:177-239 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e2agpB2 B:241-341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Domains in the same PDB:

e2agpA3 A:2-20,A:76-176 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2agpA4 A:21-75 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e2agpA1 A:177-239 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e2agpA2 A:241-341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain
e2agpB3 B:2-20,B:76-176 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2agpB4 B:21-75 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e2agpB1 B:177-239 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e2agpB2 B:241-341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Structural contacts of domain e2agpB1 of H-group "SAM/DNA-glycosylase":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2agpA2 B:x,y,z->A:X,Y-1,Z Lesion bypass DNA polymerase (Y-family), little finger domain Interaction Interface Pymol