ECOD: domain e2csbB5

Domain ID e2csbB5

A: alpha arrays
X: HhH/H2TH
H: SAM/DNA-glycosylase
T: SAM domain-like
F: Unmapped domains

UID:	000294607
Type:	Automatic domain
Parent:	e2a1jB1
Range:	B:465-519
PDB:	2csb
PDB Description:	Topoisomerase V
UniProt:	Q977W1
Species:	Methanopyrus kandleri

Domain
In chain context
In PDB context

Structure of domain e2csbB5

Domains in the same chain:

Download Pymol

e2csbB6	B:3-179,B:238-293	Topoisomerase V catalytic domain-like	Topoisomerase V catalytic domain-like	Topoisomerase V catalytic domain-like
e2csbB1	B:180-237	HTH	HTH	tri-helical
e2csbB3	B:294-350	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2csbB2	B:351-409	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2csbB4	B:410-464	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2csbB5	B:465-519	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like

Domains in the same PDB:

e2csbA6	A:3-179,A:238-293	Topoisomerase V catalytic domain-like	Topoisomerase V catalytic domain-like	Topoisomerase V catalytic domain-like
e2csbA1	A:180-237	HTH	HTH	tri-helical
e2csbA3	A:294-350	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2csbA2	A:351-409	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2csbA4	A:410-464	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2csbA5	A:465-519	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2csbB6	B:3-179,B:238-293	Topoisomerase V catalytic domain-like	Topoisomerase V catalytic domain-like	Topoisomerase V catalytic domain-like
e2csbB1	B:180-237	HTH	HTH	tri-helical
e2csbB3	B:294-350	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2csbB2	B:351-409	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2csbB4	B:410-464	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2csbB5	B:465-519	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like

Structural contacts of domain e2csbB5 of H-group "SAM/DNA-glycosylase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2csbA5	B:-X,Y-1/2,-Z+3/2->A:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol
e2csbA4	B:x,y,z->A:X-1,Y,Z	SAM/DNA-glycosylase	Interaction Interface Pymol