ECOD: domain e2d5fB3

Domain ID e2d5fB3

A: beta sandwiches
X: jelly-roll
H: Double-stranded beta-helix
T: Double-stranded beta-helix
F: Cupin_1

UID:	001280242
Type:	Automatic domain
Parent:	e2et1A1
Range:	B:7-178,B:200-236
Ligands:	CO3
PDB:	2d5f
PDB Description:	GLYCININ A3B4 SUBUNIT
UniProt:	Q7GC77
Species:	Glycine max

Domain
In chain context
In PDB context

Structure of domain e2d5fB3

Domains in the same chain:

Download Pymol

e2d5fB3	B:7-178,B:200-236	jelly-roll	Double-stranded beta-helix	Double-stranded beta-helix
e2d5fB4	B:237-251,B:321-493	jelly-roll	Double-stranded beta-helix	Double-stranded beta-helix

Domains in the same PDB:

e2d5fA4	A:7-178,A:200-224	jelly-roll	Double-stranded beta-helix	Double-stranded beta-helix
e2d5fA3	A:225-251,A:321-493	jelly-roll	Double-stranded beta-helix	Double-stranded beta-helix
e2d5fB3	B:7-178,B:200-236	jelly-roll	Double-stranded beta-helix	Double-stranded beta-helix
e2d5fB4	B:237-251,B:321-493	jelly-roll	Double-stranded beta-helix	Double-stranded beta-helix

Structural contacts of domain e2d5fB3 of H-group "Double-stranded beta-helix":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2d5fB4	B:x,y,z->B:-Y+1,X-Y+1,Z	Double-stranded beta-helix	Interaction Interface Pymol
e2d5fB3	B:x,y,z->B:-Y+1,X-Y+1,Z	Double-stranded beta-helix	Interaction Interface Pymol
e2d5fB4	B:-Y+1,X-Y+1,Z->B:x,y,z	Double-stranded beta-helix	Interaction Interface Pymol
e2d5fB3	B:-Y+1,X-Y+1,Z->B:x,y,z	Double-stranded beta-helix	Interaction Interface Pymol
e2d5fA3	B:x,y,z->A:X,Y,Z	Double-stranded beta-helix	Interaction Interface Pymol
e2d5fA3	B:-X+Y+2/3,-X+4/3,Z+1/3->A:x,y,z	Double-stranded beta-helix	Interaction Interface Pymol
e2d5fA3	B:x,y,z->A:-Y+1,X-Y+1,Z	Double-stranded beta-helix	Interaction Interface Pymol
e2d5fA4	B:x,y,z->A:-Y+1,X-Y+1,Z	Double-stranded beta-helix	Interaction Interface Pymol
e2d5fA4	B:-Y+2/3,X-Y+1/3,Z+1/3->A:x,y,z	Double-stranded beta-helix	Interaction Interface Pymol
e2d5fA4	B:X-1/3,Y-2/3,Z+1/3->A:x,y,z	Double-stranded beta-helix	Interaction Interface Pymol
e2d5fA3	B:X-1/3,Y-2/3,Z+1/3->A:x,y,z	Double-stranded beta-helix	Interaction Interface Pymol