Domain ID e2d6fB3

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  • A: beta barrels
  • X: SH3
  • H: GatD N-terminal domain-like
  • T: GatD N-terminal domain-like
  • F: GatD_N
UID: 001176648
Type: Automatic domain
Parent: e1zq1A1
Range: B:2-73
PDB: 2d6f
PDB Description: Glutamyl-tRNA(Gln) amidotransferase subunit D
UniProt: O26802
Species: Methanothermobacter thermautotrophicus

Structure of domain e2d6fB3

Domains in the same chain:

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e2d6fB3 B:2-73 SH3 GatD N-terminal domain-like GatD N-terminal domain-like
e2d6fB5 B:74-298 Glutaminase/Asparaginase N-terminal domain Glutaminase/Asparaginase N-terminal domain Glutaminase/Asparaginase N-terminal domain
e2d6fB4 B:299-435 Glutaminase/Asparaginase C-terminal domain Glutaminase/Asparaginase C-terminal domain Glutaminase/Asparaginase C-terminal domain

Domains in the same PDB:

e2d6fA3 A:2-73 SH3 GatD N-terminal domain-like GatD N-terminal domain-like
e2d6fA5 A:74-298 Glutaminase/Asparaginase N-terminal domain Glutaminase/Asparaginase N-terminal domain Glutaminase/Asparaginase N-terminal domain
e2d6fA4 A:299-435 Glutaminase/Asparaginase C-terminal domain Glutaminase/Asparaginase C-terminal domain Glutaminase/Asparaginase C-terminal domain
e2d6fB3 B:2-73 SH3 GatD N-terminal domain-like GatD N-terminal domain-like
e2d6fB5 B:74-298 Glutaminase/Asparaginase N-terminal domain Glutaminase/Asparaginase N-terminal domain Glutaminase/Asparaginase N-terminal domain
e2d6fB4 B:299-435 Glutaminase/Asparaginase C-terminal domain Glutaminase/Asparaginase C-terminal domain Glutaminase/Asparaginase C-terminal domain
e2d6fC2 C:1-270,C:396-435 Glutamine synthetase-like Glutamine synthetase/guanido kinase Glutamine synthetase/guanido kinase
e2d6fC3 C:271-395 Prokaryotic AspRS, insert domain Prokaryotic AspRS, insert domain Prokaryotic AspRS, insert domain
e2d6fC1 C:445-503 ERP29 C domain-like GatB/GatE C-terminal domain GatB/GatE C-terminal domain
e2d6fD2 D:1-270,D:396-437 Glutamine synthetase-like Glutamine synthetase/guanido kinase Glutamine synthetase/guanido kinase
e2d6fD3 D:271-395 Prokaryotic AspRS, insert domain Prokaryotic AspRS, insert domain Prokaryotic AspRS, insert domain
e2d6fD4 D:444-538 ERP29 C domain-like GatB/GatE C-terminal domain GatB/GatE C-terminal domain

Structural contacts of domain e2d6fB3 of H-group "GatD N-terminal domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2d6fA4 B:x,y,z->A:X,Y,Z Glutaminase/Asparaginase C-terminal domain Interaction Interface Pymol
e2d6fD2 B:X,Y,Z->D:x,y,z Glutamine synthetase/guanido kinase Interaction Interface Pymol
e2d6fD3 B:x,y,z->D:X-1/2,-Y+1/2,-Z+1 Prokaryotic AspRS, insert domain Interaction Interface Pymol
e2d6fA3 B:x,y,z->A:-X,Y-1/2,-Z+1/2 GatD N-terminal domain-like Interaction Interface Pymol