Domain ID e2dgkE3

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  • A: a/b three-layered sandwiches
  • X: PLP-dependent transferases
  • H: PLP-dependent transferases
  • T: PLP-dependent transferases
  • F: Pyridoxal_deC
UID: 001194193
Type: Automatic domain
Parent: e1js3A2
Range: E:29-336
Ligands: EDO PLP SO4
PDB: 2dgk
PDB Description: GLUTAMATE DECARBOXYLASE BETA
UniProt: P69910
Hsap BLAST neighbor: O95470
Species: Escherichia coli

Structure of domain e2dgkE3

Domains in the same chain:

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e2dgkE3 E:29-336 PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases
e2dgkE2 E:337-466 C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases

Domains in the same PDB:

e2dgkA3 A:29-336 PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases
e2dgkA2 A:337-466 C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases
e2dgkB3 B:29-336 PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases
e2dgkB2 B:337-466 C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases
e2dgkC3 C:30-336 PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases
e2dgkC2 C:337-466 C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases
e2dgkD3 D:29-336 PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases
e2dgkD2 D:337-466 C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases
e2dgkE3 E:29-336 PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases
e2dgkE2 E:337-466 C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases
e2dgkF3 F:29-336 PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases
e2dgkF2 F:337-466 C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases

Structural contacts of domain e2dgkE3 of H-group "PLP-dependent transferases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2dgkF3 E:X,Y,Z->F:x,y,z PLP-dependent transferases Interaction Interface Pymol
e2dgkF2 E:X,Y,Z->F:x,y,z C-terminal domain in some PLP-dependent transferases Interaction Interface Pymol
e2dgkD2 E:x,y,z->D:X,Y,Z C-terminal domain in some PLP-dependent transferases Interaction Interface Pymol
e2dgkD3 E:x,y,z->D:X,Y,Z PLP-dependent transferases Interaction Interface Pymol
e2dgkA3 E:x,y,z->A:-X+1/2,-Y,Z-1/2 PLP-dependent transferases Interaction Interface Pymol
e2dgkA3 E:-X+1,Y-1/2,-Z+1/2->A:x,y,z PLP-dependent transferases Interaction Interface Pymol
e2dgkB3 E:x,y,z->B:-X+1/2,-Y,Z-1/2 PLP-dependent transferases Interaction Interface Pymol