| UID: | 001005434 |
|---|---|
| Type: | Manual and representative domain |
| Range: | A:1-355 |
| Ligands: | SEP |
| PDB: | 2du3 |
| PDB Description: | O-phosphoseryl-tRNA synthetase |
| UniProt: | O30126 |
| Hsap BLAST neighbor: | Q9Y285 |
| Species: | Archaeoglobus fulgidus |
Structure of domain e2du3A1
Domains in the same chain:
Domains in the same PDB:
Structural contacts of domain e2du3A1 of H-group "Class II aaRS and biotin synthetases":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e2du3B2 | A:X,Y,Z->B:x,y,z | O-phosphoseryl-tRNA synthetase C-terminal domain | Interaction Interface Pymol |
| e2du3B3 | A:X,Y,Z->B:x,y,z | Class II aaRS and biotin synthetases | Interaction Interface Pymol |
| e2du3B2 | A:Y,X,-Z->B:x,y,z | O-phosphoseryl-tRNA synthetase C-terminal domain | Interaction Interface Pymol |
| e2du3B3 | A:Y,X,-Z->B:x,y,z | Class II aaRS and biotin synthetases | Interaction Interface Pymol |
| e2du3B2 | A:x,y,z->B:-X+1,-X+Y,-Z+1/3 | O-phosphoseryl-tRNA synthetase C-terminal domain | Interaction Interface Pymol |
| e2du3A1 | A:x,y,z->A:Y,X,-Z | Class II aaRS and biotin synthetases | Interaction Interface Pymol |
| e2du3A2 | A:x,y,z->A:Y,X,-Z | O-phosphoseryl-tRNA synthetase C-terminal domain | Interaction Interface Pymol |
| e2du3A1 | A:Y,X,-Z->A:x,y,z | Class II aaRS and biotin synthetases | Interaction Interface Pymol |
| e2du3A2 | A:Y,X,-Z->A:x,y,z | O-phosphoseryl-tRNA synthetase C-terminal domain | Interaction Interface Pymol |
| e2du3A1 | A:x,y,z->A:X-Y,-Y+1,-Z-1/3 | Class II aaRS and biotin synthetases | Interaction Interface Pymol |
| e2du3A3 | A:x,y,z->A:X-Y,-Y+1,-Z-1/3 | SSHS domain in O-phosphoseryl-tRNA synthetase | Interaction Interface Pymol |
| e2du3A1 | A:X-Y,-Y+1,-Z-1/3->A:x,y,z | Class II aaRS and biotin synthetases | Interaction Interface Pymol |
| e2du3B3 | A:-Y+1,X-Y+1,Z+1/3->B:x,y,z | Class II aaRS and biotin synthetases | Interaction Interface Pymol |
