ECOD: domain e2du3A1

Domain ID e2du3A1

A: a+b three layers
X: Class II aaRS and biotin synthetases
H: Class II aaRS and biotin synthetases
T: Class II aaRS and biotin synthetases
F: tRNA-synt_2d

UID:	001005434
Type:	Manual and representative domain
Range:	A:1-355
Ligands:	SEP
PDB:	2du3
PDB Description:	O-phosphoseryl-tRNA synthetase
UniProt:	O30126
Hsap BLAST neighbor:	Q9Y285
Species:	Archaeoglobus fulgidus

Domains in the same chain:

Download Pymol

e2du3A1	A:1-355	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e2du3A2	A:356-431,A:464-534	Alpha-beta plaits	O-phosphoseryl-tRNA synthetase C-terminal domain	O-phosphoseryl-tRNA synthetase C-terminal domain
e2du3A3	A:432-463	SSHS domain	SSHS domain in O-phosphoseryl-tRNA synthetase	SSHS domain in O-phosphoseryl-tRNA synthetase

Domains in the same PDB:

e2du3A1	A:1-355	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e2du3A2	A:356-431,A:464-534	Alpha-beta plaits	O-phosphoseryl-tRNA synthetase C-terminal domain	O-phosphoseryl-tRNA synthetase C-terminal domain
e2du3A3	A:432-463	SSHS domain	SSHS domain in O-phosphoseryl-tRNA synthetase	SSHS domain in O-phosphoseryl-tRNA synthetase
e2du3B3	B:1-104,B:174-354	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e2du3B2	B:356-534	Alpha-beta plaits	O-phosphoseryl-tRNA synthetase C-terminal domain	O-phosphoseryl-tRNA synthetase C-terminal domain

Structural contacts of domain e2du3A1 of H-group "Class II aaRS and biotin synthetases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2du3B2	A:X,Y,Z->B:x,y,z	O-phosphoseryl-tRNA synthetase C-terminal domain	Interaction Interface Pymol
e2du3B3	A:X,Y,Z->B:x,y,z	Class II aaRS and biotin synthetases	Interaction Interface Pymol
e2du3B2	A:Y,X,-Z->B:x,y,z	O-phosphoseryl-tRNA synthetase C-terminal domain	Interaction Interface Pymol
e2du3B3	A:Y,X,-Z->B:x,y,z	Class II aaRS and biotin synthetases	Interaction Interface Pymol
e2du3B2	A:x,y,z->B:-X+1,-X+Y,-Z+1/3	O-phosphoseryl-tRNA synthetase C-terminal domain	Interaction Interface Pymol
e2du3A1	A:x,y,z->A:Y,X,-Z	Class II aaRS and biotin synthetases	Interaction Interface Pymol
e2du3A2	A:x,y,z->A:Y,X,-Z	O-phosphoseryl-tRNA synthetase C-terminal domain	Interaction Interface Pymol
e2du3A1	A:Y,X,-Z->A:x,y,z	Class II aaRS and biotin synthetases	Interaction Interface Pymol
e2du3A2	A:Y,X,-Z->A:x,y,z	O-phosphoseryl-tRNA synthetase C-terminal domain	Interaction Interface Pymol
e2du3A1	A:x,y,z->A:X-Y,-Y+1,-Z-1/3	Class II aaRS and biotin synthetases	Interaction Interface Pymol
e2du3A3	A:x,y,z->A:X-Y,-Y+1,-Z-1/3	SSHS domain in O-phosphoseryl-tRNA synthetase	Interaction Interface Pymol
e2du3A1	A:X-Y,-Y+1,-Z-1/3->A:x,y,z	Class II aaRS and biotin synthetases	Interaction Interface Pymol
e2du3B3	A:-Y+1,X-Y+1,Z+1/3->B:x,y,z	Class II aaRS and biotin synthetases	Interaction Interface Pymol