Domain ID e2dy1A5

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: MnmE_helical_2nd
UID: 000009601
Type: Manual and representative domain
Range: A:8-274
Ligands: GTP MG
PDB: 2dy1
PDB Description: ELONGATION FACTOR G
UniProt: Q5SI76
Hsap BLAST neighbor: Q96RP9
Species: Thermus thermophilus

Structure of domain e2dy1A5

Structural contacts of domain e2dy1A5 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2dy1A2 A:x,y,z->A:-X,Y,-Z EF-G C-terminal domain-like Interaction Interface Pymol
e2dy1A2 A:-X,Y,-Z->A:x,y,z EF-G C-terminal domain-like Interaction Interface Pymol
e2dy1A5 A:x,y,z->A:-X+1/2,Y-1/2,-Z P-loop domains-related Interaction Interface Pymol
e2dy1A5 A:-X+1/2,Y-1/2,-Z->A:x,y,z P-loop domains-related Interaction Interface Pymol
e2dy1A1 A:-X+1/2,Y-1/2,-Z->A:x,y,z RIFT-related Interaction Interface Pymol
e2dy1A4 A:X-1/2,Y-1/2,Z->A:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2dy1A3 A:X-1/2,Y-1/2,Z->A:x,y,z EF-G C-terminal domain-like Interaction Interface Pymol
e2dy1A1 A:X,Y-1,Z->A:x,y,z RIFT-related Interaction Interface Pymol