ECOD: domain e2dy1A5

Domain ID e2dy1A5

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: GTP_EFTU

UID:	000009601
Type:	Manual and representative domain
Range:	A:8-274
Ligands:	GTP MG
PDB:	2dy1
PDB Description:	ELONGATION FACTOR G
UniProt:	Q5SI76
Hsap BLAST neighbor:	Q96RP9
Species:	Thermus thermophilus

Domains in the same chain:

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Domains in the same PDB:

Structural contacts of domain e2dy1A5 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2dy1A2	A:x,y,z->A:-X,Y,-Z	EF-G C-terminal domain-like	Interaction Interface Pymol
e2dy1A2	A:-X,Y,-Z->A:x,y,z	EF-G C-terminal domain-like	Interaction Interface Pymol
e2dy1A5	A:x,y,z->A:-X+1/2,Y-1/2,-Z	P-loop domains-related	Interaction Interface Pymol
e2dy1A5	A:-X+1/2,Y-1/2,-Z->A:x,y,z	P-loop domains-related	Interaction Interface Pymol
e2dy1A1	A:-X+1/2,Y-1/2,-Z->A:x,y,z	RIFT-related	Interaction Interface Pymol
e2dy1A4	A:X-1/2,Y-1/2,Z->A:x,y,z	Ribosomal protein S5 domain 2-like	Interaction Interface Pymol
e2dy1A3	A:X-1/2,Y-1/2,Z->A:x,y,z	EF-G C-terminal domain-like	Interaction Interface Pymol
e2dy1A1	A:X,Y-1,Z->A:x,y,z	RIFT-related	Interaction Interface Pymol

e2dy1A5	A:8-274	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2dy1A1	A:275-377	cradle loop barrel	RIFT-related	Alanine racemase-C
e2dy1A2	A:378-454	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e2dy1A4	A:455-569	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e2dy1A3	A:570-665	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like