Domain ID e2dy4D1

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  • A: alpha bundles
  • X: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • H: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • T: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • F: Unmapped domains
UID: 000057647
Type: Automatic domain
Parent: e1ih7A1
Range: D:468-573
PDB: 2dy4
PDB Description: DNA polymerase
UniProt: Q38087
Species: Enterobacteria phage RB69

Structure of domain e2dy4D1

Domains in the same chain:

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e2dy4D4 D:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2dy4D3 D:376-467,D:574-731 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2dy4D1 D:468-573 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2dy4D2 D:732-897 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e2dy4A4 A:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2dy4A3 A:376-467,A:574-731 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2dy4A1 A:468-573 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2dy4A2 A:732-902 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e2dy4B4 B:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2dy4B3 B:376-467,B:574-731 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2dy4B1 B:468-573 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2dy4B2 B:732-902 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e2dy4C4 C:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2dy4C3 C:376-467,C:574-731 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2dy4C1 C:468-573 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2dy4C2 C:732-900 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e2dy4D4 D:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2dy4D3 D:376-467,D:574-731 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2dy4D1 D:468-573 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2dy4D2 D:732-897 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e2dy4D1 of H-group ""fingers" domain in bacteriophage RB69-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2dy4C3 D:-X,Y-1/2,-Z->C:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e2dy4B4 D:x,y,z->B:-X,Y-1/2,-Z Ribonuclease H-like Interaction Interface Pymol