ECOD: domain e2dymA3

Domain ID e2dymA3

A: a+b two layers
X: beta-Grasp
H: Ubiquitin-related
T: Ubiquitin-like
F: ATG5_UblB

UID:	000184574
Type:	Manual and representative domain
Range:	A:199-283
PDB:	2dym
PDB Description:	Autophagy protein 5
UniProt:	Q12380
Species:	Saccharomyces cerevisiae

Domains in the same chain:

Download Pymol

e2dymA1	A:1-134	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e2dymA2	A:135-198	Helical domain in autophagy protein 5	Helical domain in autophagy protein 5	Helical domain in autophagy protein 5
e2dymA3	A:199-283	beta-Grasp	Ubiquitin-related	Ubiquitin-like

Domains in the same PDB:

e2dymA1	A:1-134	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e2dymA2	A:135-198	Helical domain in autophagy protein 5	Helical domain in autophagy protein 5	Helical domain in autophagy protein 5
e2dymA3	A:199-283	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e2dymC1	C:-1-118	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e2dymC3	C:119-180	Helical domain in autophagy protein 5	Helical domain in autophagy protein 5	Helical domain in autophagy protein 5
e2dymC2	C:181-284	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e2dymE1	E:-1-118	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e2dymE3	E:119-180	Helical domain in autophagy protein 5	Helical domain in autophagy protein 5	Helical domain in autophagy protein 5
e2dymE2	E:181-284	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e2dymG1	G:-1-134	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e2dymG3	G:135-198	Helical domain in autophagy protein 5	Helical domain in autophagy protein 5	Helical domain in autophagy protein 5
e2dymG2	G:199-284	beta-Grasp	Ubiquitin-related	Ubiquitin-like

Structural contacts of domain e2dymA3 of H-group "Ubiquitin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2dymE2	A:X-1,Y,Z->E:x,y,z	Ubiquitin-related	Interaction Interface Pymol
e2dymE3	A:X-1,Y,Z->E:x,y,z	Helical domain in autophagy protein 5	Interaction Interface Pymol