Domain ID e2eikS1

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Cytochrome c oxidase Subunit F
  • F: COX5B
UID: 000089229
Type: Automatic domain
Parent: e1v54F1
Range: S:1-98
Ligands: PEK ZN
PDB: 2eik
PDB Description: CYTOCHROME C OXIDASE POLYPEPTIDE VB
UniProt: P00428
Hsap BLAST neighbor: P10606
Species: Bos taurus

Structure of domain e2eikS1

Domains in the same chain:

e2eikS1 S:1-98 Rubredoxin-like Rubredoxin-related Cytochrome c oxidase Subunit F

Domains in the same PDB:

e2eikA1 A:1-514 Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like
e2eikB2 B:1-90 Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region
e2eikB1 B:91-227 Cupredoxin-like Cupredoxin-related Cupredoxin-related
e2eikC1 C:3-261 Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like
e2eikD1 D:4-147 Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV
e2eikE1 E:5-109 Repetitive alpha hairpins Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E
e2eikF1 F:1-98 Rubredoxin-like Rubredoxin-related Cytochrome c oxidase Subunit F
e2eikG1 G:1-84 Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa
e2eikH1 H:7-85 Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h
e2eikI1 I:1-73 Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc
e2eikJ1 J:1-58 Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa
e2eikK1 K:6-54 Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb
e2eikL1 L:2-47 Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
e2eikM1 M:1-43 Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
e2eikN1 N:1-514 Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like
e2eikO2 O:1-90 Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region
e2eikO1 O:91-227 Cupredoxin-like Cupredoxin-related Cupredoxin-related
e2eikP1 P:3-261 Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like
e2eikQ1 Q:4-147 Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV Mitochondrial cytochrome c oxidase subunit IV
e2eikR1 R:5-109 Repetitive alpha hairpins Cytochrome c oxidase subunit E Cytochrome c oxidase subunit E
e2eikS1 S:1-98 Rubredoxin-like Rubredoxin-related Cytochrome c oxidase Subunit F
e2eikT1 T:1-84 Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa Mitochondrial cytochrome c oxidase subunit VIa
e2eikU1 U:7-85 Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h Cytochrome c oxidase subunit h
e2eikV1 V:1-73 Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc
e2eikW1 W:1-58 Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa
e2eikX1 X:6-54 Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb Mitochondrial cytochrome c oxidase subunit VIIb
e2eikY1 Y:2-47 Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
e2eikZ1 Z:1-43 Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)

Structural contacts of domain e2eikS1 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2eikN1 S:x,y,z->N:X,Y,Z Cytochrome c oxidase subunit I-like Interaction Interface Pymol
e2eikP1 S:x,y,z->P:X,Y,Z Cytochrome c oxidase subunit III-like Interaction Interface Pymol
e2eikO1 S:-X+3/2,-Y+3,Z-1/2->O:x,y,z Cupredoxin-related Interaction Interface Pymol
e2eikR1 S:x,y,z->R:X,Y,Z Cytochrome c oxidase subunit E Interaction Interface Pymol
e2eikQ1 S:-X+3/2,-Y+3,Z-1/2->Q:x,y,z Mitochondrial cytochrome c oxidase subunit IV Interaction Interface Pymol
e2eikW1 S:X,Y,Z->W:x,y,z Mitochondrial cytochrome c oxidase subunit VIIa Interaction Interface Pymol
e2eikQ1 S:x,y,z->Q:X,Y,Z Mitochondrial cytochrome c oxidase subunit IV Interaction Interface Pymol
e2eikF1 S:x,y,z->F:X,Y,Z Rubredoxin-related Interaction Interface Pymol
e2eikT1 S:X,Y,Z->T:x,y,z Mitochondrial cytochrome c oxidase subunit VIa Interaction Interface Pymol
e2eikG1 S:X,Y,Z->G:x,y,z Mitochondrial cytochrome c oxidase subunit VIa Interaction Interface Pymol