Domain ID e2ex3E4

Download files:
  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: DNA_pol_B_2
UID: 000115164
Type: Automatic domain
Parent: e2py5A4
Range: E:6-187
Ligands: PB
PDB: 2ex3
PDB Description: DNA polymerase
UniProt: P03680
Species: Bacillus phage phi29

Structure of domain e2ex3E4

Domains in the same chain:

Download Pymol

e2ex3E4 E:6-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2ex3E2 E:188-261,E:423-574 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2ex3E3 E:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e2ex3E1 E:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e2ex3A4 A:6-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2ex3A2 A:188-261,A:423-574 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2ex3A3 A:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e2ex3A1 A:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2ex3B1 B:71-119,B:140-172 immunoglobulin/albumin-binding domain-like DNA terminal protein N-terminal subdomain DNA terminal protein N-terminal subdomain
e2ex3B2 B:173-259 DNA terminal protein C-terminal domain DNA terminal protein C-terminal domain DNA terminal protein C-terminal domain
e2ex3C4 C:6-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2ex3C2 C:188-261,C:423-574 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2ex3C3 C:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e2ex3C1 C:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2ex3D1 D:71-171 immunoglobulin/albumin-binding domain-like DNA terminal protein N-terminal subdomain DNA terminal protein N-terminal subdomain
e2ex3D2 D:172-258 DNA terminal protein C-terminal domain DNA terminal protein C-terminal domain DNA terminal protein C-terminal domain
e2ex3E4 E:6-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2ex3E2 E:188-261,E:423-574 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2ex3E3 E:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e2ex3E1 E:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2ex3F1 F:71-171 immunoglobulin/albumin-binding domain-like DNA terminal protein N-terminal subdomain DNA terminal protein N-terminal subdomain
e2ex3F2 F:172-258 DNA terminal protein C-terminal domain DNA terminal protein C-terminal domain DNA terminal protein C-terminal domain
e2ex3G4 G:6-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2ex3G2 G:188-261,G:423-574 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2ex3G3 G:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e2ex3G1 G:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2ex3H1 H:71-171 immunoglobulin/albumin-binding domain-like DNA terminal protein N-terminal subdomain DNA terminal protein N-terminal subdomain
e2ex3H2 H:172-258 DNA terminal protein C-terminal domain DNA terminal protein C-terminal domain DNA terminal protein C-terminal domain
e2ex3I4 I:6-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2ex3I2 I:188-261,I:423-574 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2ex3I3 I:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e2ex3I1 I:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2ex3J1 J:71-171 immunoglobulin/albumin-binding domain-like DNA terminal protein N-terminal subdomain DNA terminal protein N-terminal subdomain
e2ex3J2 J:172-258 DNA terminal protein C-terminal domain DNA terminal protein C-terminal domain DNA terminal protein C-terminal domain
e2ex3K4 K:6-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2ex3K2 K:188-261,K:423-574 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2ex3K3 K:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e2ex3K1 K:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2ex3L1 L:71-171 immunoglobulin/albumin-binding domain-like DNA terminal protein N-terminal subdomain DNA terminal protein N-terminal subdomain
e2ex3L2 L:172-258 DNA terminal protein C-terminal domain DNA terminal protein C-terminal domain DNA terminal protein C-terminal domain

Structural contacts of domain e2ex3E4 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2ex3F2 E:X,Y,Z->F:x,y,z DNA terminal protein C-terminal domain Interaction Interface Pymol
e2ex3B2 E:x,y,z->B:-X+1/2,Y-1/2,-Z DNA terminal protein C-terminal domain Interaction Interface Pymol
e2ex3B1 E:x,y,z->B:-X+1/2,Y-1/2,-Z DNA terminal protein N-terminal subdomain Interaction Interface Pymol
e2ex3I2 E:x,y,z->I:-X+1/2,Y-1/2,-Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol