| UID: | 000020133 |
|---|---|
| Type: | Automatic domain |
| Range: | B:1-99 |
| Ligands: | 385 K |
| PDB: | 2fde |
| PDB Description: | Gag-Pol polyprotein |
| UniProt: | P03366 |
| Species: | Human immunodeficiency virus 1 |
Structure of domain e2fdeB1
Domains in the same chain:
| e2fdeB1 | B:1-99 | cradle loop barrel | RIFT-related | acid protease |
Domains in the same PDB:
| e2fdeA1 | A:1-99 | cradle loop barrel | RIFT-related | acid protease |
| e2fdeB1 | B:1-99 | cradle loop barrel | RIFT-related | acid protease |
Structural contacts of domain e2fdeB1 of H-group "RIFT-related":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e2fdeA1 | B:x,y,z->A:X,Y,Z | RIFT-related | Interaction Interface Pymol |
| e2fdeA1 | B:x,y,z->A:-X,-Y+1,Z-1/2 | RIFT-related | Interaction Interface Pymol |
| e2fdeB1 | B:x,y,z->B:-Y+1,X-Y+1,Z+1/3 | RIFT-related | Interaction Interface Pymol |
| e2fdeB1 | B:-Y+1,X-Y+1,Z+1/3->B:x,y,z | RIFT-related | Interaction Interface Pymol |
| e2fdeA1 | B:X-Y,X,Z+1/6->A:x,y,z | RIFT-related | Interaction Interface Pymol |
| e2fdeA1 | B:X-Y+1,X+1,Z+1/6->A:x,y,z | RIFT-related | Interaction Interface Pymol |
| e2fdeA1 | B:x,y,z->A:X-Y+1,X+1,Z+1/6 | RIFT-related | Interaction Interface Pymol |
| e2fdeB1 | B:x,y,z->B:X-Y+1,X+1,Z+1/6 | RIFT-related | Interaction Interface Pymol |
| e2fdeB1 | B:X-Y+1,X+1,Z+1/6->B:x,y,z | RIFT-related | Interaction Interface Pymol |
