Domain ID e2fflA5

Download files:
  • A: alpha arrays
  • X: RNase III catalytic domain-like
  • H: RNase III catalytic domain-like
  • T: RNase III catalytic domain-like
  • F: Ribonuclease_3
UID: 001108033
Type: Manual and representative domain
Range: A:604-754
Ligands: MN
PDB: 2ffl
PDB Description: Dicer
In assembly with: e2fflA3
UniProt: A8BQJ3
Species: Giardia intestinalis

Structure of domain e2fflA5 in assembly with e2fflA3

Domains in the same chain:

Download Pymol

e2fflA1 A:1-143,A:255-270 Giardia Dicer N-terminal domain Giardia Dicer N-terminal domain Giardia Dicer N-terminal domain
e2fflA2 A:150-254 SH3 SH3 SH3
e2fflA3 A:271-439 RNase III catalytic domain-like RNase III catalytic domain-like RNase III catalytic domain-like
e2fflA4 A:443-603 Giardia Dicer helical domain bridging RNase IIIa and RNase IIIb Giardia Dicer helical domain bridging RNase IIIa and RNase IIIb Giardia Dicer helical domain bridging RNase IIIa and RNase IIIb
e2fflA5 A:604-754 RNase III catalytic domain-like RNase III catalytic domain-like RNase III catalytic domain-like

Domains in the same PDB:

e2fflA1 A:1-143,A:255-270 Giardia Dicer N-terminal domain Giardia Dicer N-terminal domain Giardia Dicer N-terminal domain
e2fflA2 A:150-254 SH3 SH3 SH3
e2fflA3 A:271-439 RNase III catalytic domain-like RNase III catalytic domain-like RNase III catalytic domain-like
e2fflA4 A:443-603 Giardia Dicer helical domain bridging RNase IIIa and RNase IIIb Giardia Dicer helical domain bridging RNase IIIa and RNase IIIb Giardia Dicer helical domain bridging RNase IIIa and RNase IIIb
e2fflA5 A:604-754 RNase III catalytic domain-like RNase III catalytic domain-like RNase III catalytic domain-like
e2fflB5 B:0-143,B:248-263 Giardia Dicer N-terminal domain Giardia Dicer N-terminal domain Giardia Dicer N-terminal domain
e2fflB1 B:150-254 SH3 SH3 SH3
e2fflB4 B:264-430 RNase III catalytic domain-like RNase III catalytic domain-like RNase III catalytic domain-like
e2fflB3 B:443-603 Giardia Dicer helical domain bridging RNase IIIa and RNase IIIb Giardia Dicer helical domain bridging RNase IIIa and RNase IIIb Giardia Dicer helical domain bridging RNase IIIa and RNase IIIb
e2fflB2 B:604-754 RNase III catalytic domain-like RNase III catalytic domain-like RNase III catalytic domain-like
e2fflC3 C:0-143,C:248-263 Giardia Dicer N-terminal domain Giardia Dicer N-terminal domain Giardia Dicer N-terminal domain
e2fflC4 C:144-247 SH3 SH3 SH3
e2fflC2 C:264-430 RNase III catalytic domain-like RNase III catalytic domain-like RNase III catalytic domain-like
e2fflC1 C:431-579 Giardia Dicer helical domain bridging RNase IIIa and RNase IIIb Giardia Dicer helical domain bridging RNase IIIa and RNase IIIb Giardia Dicer helical domain bridging RNase IIIa and RNase IIIb
e2fflC5 C:604-754 RNase III catalytic domain-like RNase III catalytic domain-like RNase III catalytic domain-like
e2fflD3 D:0-143,D:248-263 Giardia Dicer N-terminal domain Giardia Dicer N-terminal domain Giardia Dicer N-terminal domain
e2fflD4 D:144-247 SH3 SH3 SH3
e2fflD2 D:264-430 RNase III catalytic domain-like RNase III catalytic domain-like RNase III catalytic domain-like
e2fflD1 D:431-579 Giardia Dicer helical domain bridging RNase IIIa and RNase IIIb Giardia Dicer helical domain bridging RNase IIIa and RNase IIIb Giardia Dicer helical domain bridging RNase IIIa and RNase IIIb
e2fflD5 D:604-754 RNase III catalytic domain-like RNase III catalytic domain-like RNase III catalytic domain-like

Structural contacts of domain e2fflA5 of H-group "RNase III catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2fflA5 A:X,Y,Z->B:x,y,z RNase III catalytic domain-like Interaction Interface Pymol
e2fflB3 A:X,Y,Z->B:x,y,z Giardia Dicer helical domain bridging RNase IIIa and RNase IIIb Interaction Interface Pymol
e2fflB1 A:x,y,z->B:X-1/2,-Y+1/2,-Z SH3 Interaction Interface Pymol
e2fflB1 A:x,y,z->B:X-1/2,-Y+1/2,-Z SH3 Interaction Interface Pymol
e2fflD1 A:x,y,z->D:X-1/2,-Y+1/2,-Z Giardia Dicer helical domain bridging RNase IIIa and RNase IIIb Interaction Interface Pymol