Domain ID e2fynD3

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  • A: alpha bundles
  • X: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
  • H: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
  • T: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
  • F: Cytochrom_B_C
UID: 001225071
Type: Automatic domain
Parent: e1ppjC1
Range: D:285-430
Ligands: HEM LOP SMA
PDB: 2fyn
PDB Description: Cytochrome b
UniProt: Q02761
Hsap BLAST neighbor: P00156
Species: Rhodobacter sphaeroides

Structure of domain e2fynD3

Domains in the same chain:

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e2fynD2 D:3-284 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes
e2fynD3 D:285-430 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)

Domains in the same PDB:

e2fynA1 A:3-284 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes
e2fynA3 A:285-430 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2fynB1 B:1-256 Cytochrome c-like Cytochrome c Cytochrome c
e2fynC2 C:9-41 iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor
e2fynC4 C:46-127,C:171-187 ISP domain ISP domain ISP domain
e2fynC3 C:128-170 Trm112p-like Trm112p-like Trm112p-like
e2fynD2 D:3-284 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes
e2fynD3 D:285-430 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2fynE1 E:1-256 Cytochrome c-like Cytochrome c Cytochrome c
e2fynF2 F:9-41 iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor
e2fynF3 F:46-127,F:171-187 ISP domain ISP domain ISP domain
e2fynF4 F:128-170 Trm112p-like Trm112p-like Trm112p-like
e2fynG2 G:3-284 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes
e2fynG3 G:285-430 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2fynH1 H:1-256 Cytochrome c-like Cytochrome c Cytochrome c
e2fynI2 I:9-41 iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor
e2fynI4 I:45-127,I:171-187 ISP domain ISP domain ISP domain
e2fynI3 I:128-170 Trm112p-like Trm112p-like Trm112p-like
e2fynJ2 J:3-284 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes
e2fynJ3 J:285-430 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2fynK1 K:1-256 Cytochrome c-like Cytochrome c Cytochrome c
e2fynL2 L:9-41 iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor
e2fynL3 L:46-127,L:171-187 ISP domain ISP domain ISP domain
e2fynL4 L:128-170 Trm112p-like Trm112p-like Trm112p-like
e2fynM2 M:3-284 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes
e2fynM3 M:285-430 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2fynN1 N:1-256 Cytochrome c-like Cytochrome c Cytochrome c
e2fynO2 O:9-41 iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor
e2fynO3 O:46-127,O:171-187 ISP domain ISP domain ISP domain
e2fynO4 O:128-170 Trm112p-like Trm112p-like Trm112p-like
e2fynP2 P:3-284 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes
e2fynP3 P:285-430 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2fynQ1 Q:1-256 Cytochrome c-like Cytochrome c Cytochrome c
e2fynR2 R:9-41 iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor
e2fynR3 R:46-127,R:171-187 ISP domain ISP domain ISP domain
e2fynR4 R:128-170 Trm112p-like Trm112p-like Trm112p-like

Structural contacts of domain e2fynD3 of H-group "a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2fynE1 D:X,Y,Z->E:x,y,z Cytochrome c Interaction Interface Pymol
e2fynE1 D:X,Y,Z->C:x,y,z Cytochrome c Interaction Interface Pymol
e2fynP3 D:-X,Y-1,-Z+1->P:x,y,z a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Interaction Interface Pymol
e2fynG3 D:X,Y,Z->G:x,y,z a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Interaction Interface Pymol