ECOD: domain e2gagD1

Domain ID e2gagD1

A: few secondary structure elements
X: Rubredoxin-like
H: Rubredoxin-related
T: Rubredoxin-related
F: SoxD

UID:	000161335
Type:	Automatic domain
Parent:	e3ad7D1
Range:	D:1-91
Ligands:	ZN
PDB:	2gag
PDB Description:	HETEROTETRAMERIC SARCOSINE OXIDASE DELTA-SUBUNIT
UniProt:	Q3ZDQ9
Species:	Stenotrophomonas maltophilia

Domain
In chain context
In PDB context

Structure of domain e2gagD1

Domains in the same chain:

Download Pymol

e2gagD1	D:1-91	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related

Domains in the same PDB:

e2gagA8	A:1-128	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e2gagA5	A:129-481	Rossmann-like	Rossmann-related	Nucleotide-binding domain
e2gagA4	A:482-538	HTH	bacterioferritin-associated ferredoxin	bacterioferritin-associated ferredoxin
e2gagA7	A:557-724	Alpha-beta plaits	Aminomethyltransferase folate-binding domain	Aminomethyltransferase folate-binding domain
e2gagA6	A:725-856	Alpha-beta plaits	Aminomethyltransferase folate-binding domain	Aminomethyltransferase folate-binding domain
e2gagA3	A:860-965	cradle loop barrel	RIFT-related	Aminomethyltransferase beta-barrel domain
e2gagB2	B:3-242,B:332-405	Rossmann-like	Rossmann-related	FAD/NAD(P)-binding domain
e2gagB3	B:243-333	FAD-linked reductases, C-terminal domain-like	FAD-linked reductases-C	FAD-linked reductases-C
e2gagC1	C:9-198	Alpha-beta plaits	Aminomethyltransferase folate-binding domain	Aminomethyltransferase folate-binding domain
e2gagD1	D:1-91	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related

Structural contacts of domain e2gagD1 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2gagB3	D:x,y,z->B:X,Y,Z	FAD-linked reductases-C	Interaction Interface Pymol
e2gagB2	D:x,y,z->B:X,Y,Z	Rossmann-related	Interaction Interface Pymol
e2gagB2	D:x,y,z->A:X,Y,Z	Rossmann-related	Interaction Interface Pymol
e2gagA3	D:x,y,z->A:X,Y,Z	RIFT-related	Interaction Interface Pymol
e2gagA3	D:x,y,z->A:X,Y,Z	RIFT-related	Interaction Interface Pymol
e2gagC1	D:x,y,z->C:X,Y,Z	Aminomethyltransferase folate-binding domain	Interaction Interface Pymol