ECOD: domain e2gfqB1

Domain ID e2gfqB1

A: a/b three-layered sandwiches
X: Phosphorylase/hydrolase-like
H: Peptidyl-tRNA hydrolase-like
T: Peptidyl-tRNA hydrolase-like
F: tRNA_deacylase

UID:	000106153
Type:	Automatic domain
Parent:	e2gfqA1
Range:	B:1-186
Ligands:	MG SO4
PDB:	2gfq
PDB Description:	UPF0204 PROTEIN PH0006
UniProt:	O57774
Species:

Domains in the same chain:

Download Pymol

e2gfqB1	B:1-186	Phosphorylase/hydrolase-like	Peptidyl-tRNA hydrolase-like	Peptidyl-tRNA hydrolase-like
e2gfqB2	B:187-273	a/b domain in AF0625-like proteins	a/b domain in AF0625-like proteins	a/b domain in AF0625-like proteins

Domains in the same PDB:

e2gfqA1	A:1-187	Phosphorylase/hydrolase-like	Peptidyl-tRNA hydrolase-like	Peptidyl-tRNA hydrolase-like
e2gfqA2	A:188-274	a/b domain in AF0625-like proteins	a/b domain in AF0625-like proteins	a/b domain in AF0625-like proteins
e2gfqB1	B:1-186	Phosphorylase/hydrolase-like	Peptidyl-tRNA hydrolase-like	Peptidyl-tRNA hydrolase-like
e2gfqB2	B:187-273	a/b domain in AF0625-like proteins	a/b domain in AF0625-like proteins	a/b domain in AF0625-like proteins
e2gfqC1	C:1-186	Phosphorylase/hydrolase-like	Peptidyl-tRNA hydrolase-like	Peptidyl-tRNA hydrolase-like
e2gfqC2	C:187,C:189-273	a/b domain in AF0625-like proteins	a/b domain in AF0625-like proteins	a/b domain in AF0625-like proteins

Structural contacts of domain e2gfqB1 of H-group "Peptidyl-tRNA hydrolase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2gfqC1	B:X,Y,Z->C:x,y,z	Peptidyl-tRNA hydrolase-like	Interaction Interface Pymol
e2gfqA1	B:X,Y-1,Z->A:x,y,z	Peptidyl-tRNA hydrolase-like	Interaction Interface Pymol
e2gfqA2	B:x,y,z->A:X,Y,Z	a/b domain in AF0625-like proteins	Interaction Interface Pymol
e2gfqA2	B:-X+1,Y-1/2,-Z+1->A:x,y,z	a/b domain in AF0625-like proteins	Interaction Interface Pymol
e2gfqA1	B:-X,Y-1/2,-Z+1->A:x,y,z	Peptidyl-tRNA hydrolase-like	Interaction Interface Pymol