ECOD: domain e2go5W2

Domain ID e2go5W2

FASTA
Coordinates
Conservation
Pymol

A: alpha arrays
X: HTH
H: HTH
T: tri-helical
F: SRP_SPB

UID:	001159638
Type:	Automatic domain
Parent:	e1hq1A1
Range:	W:326-434
PDB:	2go5
PDB Description:	SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN (SRP54)
UniProt:	P61010
Hsap BLAST neighbor:	P61011
Species:	Canis sp.

Domain
In chain context
In PDB context

Structure of domain e2go5W2

Domains in the same chain:

Download Pymol

e2go5W2	W:326-434	HTH	HTH	tri-helical

Domains in the same PDB:

Structural contacts of domain e2go5W2 of H-group "HTH":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2go5B1	W:x,y,z->B:X,Y,Z	HTH	Interaction Interface Pymol

e2go511	1:1-129	Profilin-like	profilin-like	profilin-like
e2go521	2:63-269	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2go541	4:69-149	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e2go551	5:4-67	Long alpha-hairpin	Ribosomal protein L29 (L29p)	Ribosomal protein L29 (L29p)
e2go561	6:17-97	Ribosomal protein L31e-like	Ribosomal protein L31e/gp120 outer domain	Ribosomal protein L31e/gp120 outer domain
e2go5B1	B:14-118	HTH	HTH	Putative DNA-binding domain
e2go5W2	W:326-434	HTH	HTH	tri-helical