Domain ID e2gycU1

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  • A: a+b complex topology
  • X: alpha/beta-Hammerhead/Barrel-sandwich hybrid
  • H: alpha/beta-Hammerhead/Barrel-sandwich hybrid
  • T: Ribosomal L27 protein
  • F: Ribosomal_L27
UID: 001038367
Type: Automatic domain
Parent: e3j6bR1
Range: U:1-84
PDB: 2gyc
PDB Description:
Hsap BLAST neighbor: Q9P0M9
Species:

Structure of domain e2gycU1

Domains in the same chain:

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e2gycU1 U:1-84 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein

Domains in the same PDB:

e2gyc24 2:5-67,2:159-226 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e2gyc23 2:68-158 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e2gyc32 3:53-120 ClpS-like ClpS-related ClpS-related
e2gyc51 5:2-48 Ribosomal protein L7/12, oligomerisation (N-terminal) domain Ribosomal protein L7/12, oligomerisation (N-terminal) domain Ribosomal protein L7/12, oligomerisation (N-terminal) domain
e2gyc52 5:53-120 ClpS-like ClpS-related ClpS-related
e2gycA4 A:38-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2gycA3 A:125-264 SH3 SH3 SH3
e2gycD1 D:2-178 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e2gycE2 E:5-81 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2gycE1 E:82-171 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2gycF2 F:1-52 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e2gycG2 G:2-71 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e2gycG1 G:73-138 HTH HTH Ribosomal protein L11, C-terminal domain
e2gycI1 I:2-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e2gycL1 L:3-116 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e2gycQ1 Q:5-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e2gycR1 R:7-98 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e2gycT1 T:1-94 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e2gycU1 U:1-84 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2gycX1 X:3-58 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e

Structural contacts of domain e2gycU1 of H-group "alpha/beta-Hammerhead/Barrel-sandwich hybrid":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3j6bR1 U:X,Y,Z->M:x,y,z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e3j6bR1 U:X,Y,Z->K:x,y,z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol