| UID: | 000011152 |
|---|---|
| Type: | Manual and representative domain |
| Range: | A:129-420 |
| Ligands: | MN |
| PDB: | 2hbk |
| PDB Description: | Exosome complex exonuclease RRP6 |
| UniProt: | Q12149 |
| Hsap BLAST neighbor: | Q01780 |
| Species: | Saccharomyces cerevisiae |
Structure of domain e2hbkA2
Domains in the same chain:
| e2hbkA2 | A:129-420 | Ribonuclease H-like | Ribonuclease H-like | Ribonuclease H-like |
| e2hbkA1 | A:421-516 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
Domains in the same PDB:
| e2hbkA2 | A:129-420 | Ribonuclease H-like | Ribonuclease H-like | Ribonuclease H-like |
| e2hbkA1 | A:421-516 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
Structural contacts of domain e2hbkA2 of H-group "Ribonuclease H-like":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e2hbkA2 | A:x,y,z->A:X-Y,-Y,-Z+2/3 | Ribonuclease H-like | Interaction Interface Pymol |
| e2hbkA2 | A:X-Y,-Y,-Z+2/3->A:x,y,z | Ribonuclease H-like | Interaction Interface Pymol |
| e2hbkA1 | A:x,y,z->A:-Y+1,X-Y,Z+1/3 | SAM/DNA-glycosylase | Interaction Interface Pymol |
| e2hbkA2 | A:x,y,z->A:-X+2,-X+Y+1,-Z+1/3 | Ribonuclease H-like | Interaction Interface Pymol |
| e2hbkA2 | A:-X+2,-X+Y+1,-Z+1/3->A:x,y,z | Ribonuclease H-like | Interaction Interface Pymol |
| e2hbkA1 | A:Y,X-1,-Z->A:x,y,z | SAM/DNA-glycosylase | Interaction Interface Pymol |
| e2hbkA2 | A:x,y,z->A:X-Y,-Y,-Z-1/3 | Ribonuclease H-like | Interaction Interface Pymol |
| e2hbkA2 | A:X-Y,-Y,-Z-1/3->A:x,y,z | Ribonuclease H-like | Interaction Interface Pymol |
