Domain ID e2hdn.5

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: GTP_EFTU
UID: 001312970
Type: Automatic domain
Parent: e2c78A3
Range: I:8-40,J:59-203
Ligands: GDP MG TAC
PDB: 2hdn
PDB Description: Elongation factor EF-Tu
UniProt: P0CE47
Hsap BLAST neighbor: P49411
Species:

Structure of domain e2hdn.5

Domains in the same chain:

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e2hdn.5 I:8-40,J:59-203 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2hdnJ3 J:203-296 cradle loop barrel RIFT-related Alanine racemase-C
e2hdnJ2 J:289-393 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain

Domains in the same PDB:

e2hdn.1 A:8-40,B:59-203 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2hdnB4 B:202-300 cradle loop barrel RIFT-related Alanine racemase-C
e2hdnB2 B:289-393 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e2hdn.2 C:8-40,D:59-203 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2hdnD4 D:202-300 cradle loop barrel RIFT-related Alanine racemase-C
e2hdnD2 D:289-393 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e2hdn.3 E:8-40,F:59-203 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2hdnF4 F:202-300 cradle loop barrel RIFT-related Alanine racemase-C
e2hdnF2 F:289-393 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e2hdn.4 G:8-40,H:59-203 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2hdnH4 H:202-300 cradle loop barrel RIFT-related Alanine racemase-C
e2hdnH2 H:289-393 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e2hdn.5 I:8-40,J:59-203 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2hdnJ3 J:203-296 cradle loop barrel RIFT-related Alanine racemase-C
e2hdnJ2 J:289-393 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e2hdn.6 K:8-40,L:59-203 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2hdnL4 L:202-300 cradle loop barrel RIFT-related Alanine racemase-C
e2hdnL2 L:289-393 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain

Structural contacts of domain e2hdn.5 of H-group "P-loop domains-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2hdn.5 J:x,y,z->I:X,Y,Z P-loop domains-related Interaction Interface Pymol
e2hdn.5 I:X,Y,Z->J:x,y,z P-loop domains-related Interaction Interface Pymol
e2hdn.6 J:X,Y,Z->L:x,y,z P-loop domains-related Interaction Interface Pymol
e2hdnB2 J:x,y,z->B:-X+2,Y-1/2,-Z+1 RIFT-related Interaction Interface Pymol
e2hdnB4 J:x,y,z->B:-X+1,Y-1/2,-Z+1 RIFT-related Interaction Interface Pymol
e2hdnB4 I:x,y,z->B:-X+1,Y-1/2,-Z+1 RIFT-related Interaction Interface Pymol
e2hdnD2 J:x,y,z->D:-X+1,Y-1/2,-Z+1 RIFT-related Interaction Interface Pymol
e2hdnD4 J:x,y,z->D:-X+1,Y-1/2,-Z+1 RIFT-related Interaction Interface Pymol
e2hdnD4 I:x,y,z->D:-X+1,Y-1/2,-Z+1 RIFT-related Interaction Interface Pymol