Domain ID e2hviD4

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: DNA_polI_exo1
UID: 000115067
Type: Automatic domain
Parent: e2hhvA4
Range: D:298-468
Ligands: SO4 SUC
PDB: 2hvi
PDB Description: DNA Polymerase I
UniProt: Q5KWC1
Species: Geobacillus stearothermophilus

Structure of domain e2hviD4

Domains in the same chain:

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e2hviD4 D:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2hviD2 D:469-642 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2hviD3 D:643-667,D:792-875 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2hviD1 D:668-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e2hviA4 A:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2hviA2 A:469-642 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2hviA3 A:643-667,A:792-875 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2hviA1 A:668-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e2hviD4 D:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2hviD2 D:469-642 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2hviD3 D:643-667,D:792-875 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2hviD1 D:668-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e2hviD4 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2hviD1 D:X-1/2,-Y-1/2,-Z->D:x,y,z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e2hviD3 D:X-1/2,-Y-1/2,-Z->D:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e2hviA2 D:x,y,z->A:-X+5/2,-Y-1,Z-1/2 "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e2hviA4 D:x,y,z->A:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e2hviA2 D:x,y,z->A:X,Y,Z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e2hviA2 D:X-1/2,-Y-1/2,-Z->A:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e2hviA1 D:X-1/2,-Y-1/2,-Z->A:x,y,z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e2hviD2 D:x,y,z->D:-X+3,Y-1/2,-Z-1/2 "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol