Domain ID e2i5jB1

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  • A: alpha bundles
  • X: helical bundle domain in reverse transcriptase-like polymerases
  • H: helical bundle domain in reverse transcriptase-like polymerases
  • T: helical bundle domain in reverse transcriptase-like polymerases
  • F: RVT_thumb
UID: 000054840
Type: Automatic domain
Parent: e2zd1B1
Range: B:242-315
PDB: 2i5j
PDB Description: Reverse transcriptase/ribonuclease H P51 subunit
UniProt: Q8UM83
Species: Human immunodeficiency virus 1

Structure of domain e2i5jB1

Domains in the same chain:

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e2i5jB2 B:5-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2i5jB1 B:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2i5jB3 B:316-427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Domains in the same PDB:

e2i5jA7 A:1-240 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2i5jA6 A:241-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2i5jA5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e2i5jA3 A:429-552 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2i5jB2 B:5-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2i5jB1 B:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2i5jB3 B:316-427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e2i5jB1 of H-group "helical bundle domain in reverse transcriptase-like polymerases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2i5jA3 B:x,y,z->A:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e2i5jB1 B:x,y,z->B:-X+1,Y,-Z+1 helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e2i5jB1 B:-X+1,Y,-Z+1->B:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol