ECOD: domain e2ibkA1

Domain ID e2ibkA1

A: alpha arrays
X: HhH/H2TH
H: SAM/DNA-glycosylase
T: SAM domain-like
F: IMS_HHH

UID:	000048234
Type:	Automatic domain
Parent:	e1jx4A1
Range:	A:177-239
PDB:	2ibk
PDB Description:	DNA POLYMERASE IV
UniProt:	Q97W02
Species:

Domain
In chain context
In PDB context

Structure of domain e2ibkA1

Domains in the same chain:

Download Pymol

e2ibkA3	A:1-20,A:76-176	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e2ibkA4	A:21-75	Hypothetical protein Ta1206-like	Hypothetical protein Ta1206-like	Hypothetical protein Ta1206-like
e2ibkA1	A:177-239	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2ibkA2	A:241-341	Reverse ferredoxin	Lesion bypass DNA polymerase (Y-family), little finger domain	Lesion bypass DNA polymerase (Y-family), little finger domain

Domains in the same PDB:

e2ibkA3	A:1-20,A:76-176	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e2ibkA4	A:21-75	Hypothetical protein Ta1206-like	Hypothetical protein Ta1206-like	Hypothetical protein Ta1206-like
e2ibkA1	A:177-239	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2ibkA2	A:241-341	Reverse ferredoxin	Lesion bypass DNA polymerase (Y-family), little finger domain	Lesion bypass DNA polymerase (Y-family), little finger domain

Structural contacts of domain e2ibkA1 of H-group "SAM/DNA-glycosylase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2ibkA2	A:X-1/2,-Y-1/2,-Z-1->A:x,y,z	Lesion bypass DNA polymerase (Y-family), little finger domain	Interaction Interface Pymol
e2ibkA4	A:x,y,z->A:-X+1/2,Y-1/2,-Z	Hypothetical protein Ta1206-like	Interaction Interface Pymol