Domain ID e2ibzD1

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  • A: alpha arrays
  • X: Cytochrome c-like
  • H: Cytochrome c
  • T: Cytochrome c
  • F: Cytochrom_C1
UID: 000051683
Type: Automatic domain
Parent: e1ppjD1
Range: D:65-260
Ligands: HEM
PDB: 2ibz
PDB Description: Cytochrome c1, heme protein, mitochondrial precursor
UniProt: P07143
Hsap BLAST neighbor: P08574
Species: Saccharomyces cerevisiae

Structure of domain e2ibzD1

Domains in the same chain:

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e2ibzD1 D:65-260 Cytochrome c-like Cytochrome c Cytochrome c
e2ibzD2 D:261-306 cytochrome c1 transmembrane anchor cytochrome c1 transmembrane anchor cytochrome c1 transmembrane anchor

Domains in the same PDB:

e2ibzA1 A:27-239 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase
e2ibzA2 A:240-457 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase
e2ibzB1 B:17-218 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase
e2ibzB2 B:219-368 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase
e2ibzC2 C:14-261 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes
e2ibzC1 C:262-380 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2ibzD1 D:65-260 Cytochrome c-like Cytochrome c Cytochrome c
e2ibzD2 D:261-306 cytochrome c1 transmembrane anchor cytochrome c1 transmembrane anchor cytochrome c1 transmembrane anchor
e2ibzE2 E:31-86 iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor
e2ibzE1 E:90-156,E:199-214 ISP domain ISP domain ISP domain
e2ibzE3 E:157-198 Trm112p-like Trm112p-like Trm112p-like
e2ibzF1 F:3-127 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2ibzG1 G:2-94 Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2ibzH1 H:74-147 cytochrome bc1 complex 11 kDa protein-like Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2ibzI1 I:4-58 Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2ibzX1 X:1-122 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2ibzY1 Y:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e2ibzD1 of H-group "Cytochrome c":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2ibzC1 D:x,y,z->C:X,Y,Z a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Interaction Interface Pymol
e2ibzC2 D:x,y,z->C:X,Y,Z Transmembrane heme-binding four-helical bundle Interaction Interface Pymol
e2ibzH1 D:X,Y,Z->H:x,y,z Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Interaction Interface Pymol
e2ibzI1 D:X,Y,Z->I:x,y,z Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Interaction Interface Pymol
e2ibzE2 D:X,Y,Z->E:x,y,z iron-sulfur subunit (ISP) transmembrane anchor Interaction Interface Pymol
e2ibzD1 D:x,y,z->D:-X,Y,-Z Cytochrome c Interaction Interface Pymol
e2ibzD1 D:-X,Y,-Z->D:x,y,z Cytochrome c Interaction Interface Pymol