Domain ID e2id0D4

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  • A: beta barrels
  • X: OB-fold
  • H: RNB domain-like
  • T: RNB domain-like
  • F: RNB
UID: 000025022
Type: Automatic domain
Parent: e2vnuD4
Range: D:173-557
Ligands: MN
PDB: 2id0
PDB Description: Exoribonuclease 2
UniProt: P30850
Hsap BLAST neighbor: Q9Y2L1
Species:

Structure of domain e2id0D4

Domains in the same chain:

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e2id0D2 D:5-82 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2id0D1 D:83-172 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2id0D4 D:173-557 OB-fold RNB domain-like RNB domain-like
e2id0D3 D:558-644 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e2id0A2 A:5-82 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2id0A1 A:83-172 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2id0A4 A:173-557 OB-fold RNB domain-like RNB domain-like
e2id0A3 A:558-644 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2id0B2 B:5-82 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2id0B1 B:83-172 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2id0B4 B:173-557 OB-fold RNB domain-like RNB domain-like
e2id0B3 B:558-644 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2id0C2 C:5-82 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2id0C1 C:83-172 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2id0C4 C:173-557 OB-fold RNB domain-like RNB domain-like
e2id0C3 C:558-644 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2id0D2 D:5-82 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2id0D1 D:83-172 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2id0D4 D:173-557 OB-fold RNB domain-like RNB domain-like
e2id0D3 D:558-644 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Structural contacts of domain e2id0D4 of H-group "RNB domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2id0B4 D:X,Y-1,Z->B:x,y,z RNB domain-like Interaction Interface Pymol
e2id0B2 D:X-1,Y,Z->B:x,y,z Nucleic acid-binding proteins Interaction Interface Pymol
e2id0A4 D:x,y,z->A:X,Y,Z-1 RNB domain-like Interaction Interface Pymol
e2id0C4 D:x,y,z->C:X,Y,Z-1 RNB domain-like Interaction Interface Pymol
e2id0B4 D:X-1,Y-1,Z->B:x,y,z RNB domain-like Interaction Interface Pymol
e2id0C4 D:x,y,z->C:X-1,Y,Z-1 RNB domain-like Interaction Interface Pymol