ECOD: domain e2ijd12

Domain ID e2ijd12

A: alpha bundles
X: helical bundle domain in reverse transcriptase-like polymerases
H: helical bundle domain in reverse transcriptase-like polymerases
T: helical bundle domain in reverse transcriptase-like polymerases
F: RdRP_1

UID:	000054969
Type:	Automatic domain
Parent:	e1hhsA1
Range:	1:551-643
Ligands:	SO4
PDB:	2ijd
PDB Description:	Picornain 3C, RNA-directed RNA polymerase
UniProt:	Q1PHW8
Species:

Domain
In chain context
In PDB context

Structure of domain e2ijd12

Domains in the same chain:

Download Pymol

e2ijd11	1:1-180	cradle loop barrel	RIFT-related	FMN-binding split barrel 2
e2ijd13	1:184-550	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e2ijd12	1:551-643	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases

Domains in the same PDB:

e2ijd11	1:1-180	cradle loop barrel	RIFT-related	FMN-binding split barrel 2
e2ijd13	1:184-550	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e2ijd12	1:551-643	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases
e2ijd21	2:1-180	cradle loop barrel	RIFT-related	FMN-binding split barrel 2
e2ijd23	2:184-550	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e2ijd22	2:551-643	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases

Structural contacts of domain e2ijd12 of H-group "helical bundle domain in reverse transcriptase-like polymerases":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2ijd23	1:X,Y,Z->2:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e2ijd22	1:X,Y,Z->2:x,y,z	helical bundle domain in reverse transcriptase-like polymerases	Interaction Interface Pymol