ECOD: domain e2ijxB1

Domain ID e2ijxB1

A: a+b two layers
X: DNA clamp
H: DNA clamp
T: DNA clamp
F: PCNA_N

UID:	000329520
Type:	Automatic domain
Parent:	e1iz5A1
Range:	B:1-121
Ligands:	EDO
PDB:	2ijx
PDB Description:	DNA POLYMERASE SLIDING CLAMP A
UniProt:	P57765
Hsap BLAST neighbor:	P12004
Species:

Domains in the same chain:

Download Pymol

e2ijxB1	B:1-121	DNA clamp	DNA clamp	DNA clamp
e2ijxB2	B:122-244	DNA clamp	DNA clamp	DNA clamp

Domains in the same PDB:

e2ijxA1	A:1-121	DNA clamp	DNA clamp	DNA clamp
e2ijxA2	A:122-244	DNA clamp	DNA clamp	DNA clamp
e2ijxB1	B:1-121	DNA clamp	DNA clamp	DNA clamp
e2ijxB2	B:122-244	DNA clamp	DNA clamp	DNA clamp
e2ijxC1	C:1-121	DNA clamp	DNA clamp	DNA clamp
e2ijxC2	C:122-244	DNA clamp	DNA clamp	DNA clamp
e2ijxD1	D:1-121	DNA clamp	DNA clamp	DNA clamp
e2ijxD2	D:122-244	DNA clamp	DNA clamp	DNA clamp

Structural contacts of domain e2ijxB1 of H-group "DNA clamp":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2ijxC1	B:x,y,z->C:-Y+1/2,X-1/2,Z+1/4	DNA clamp	Interaction Interface Pymol
e2ijxC2	B:x,y,z->C:-Y+1/2,X-1/2,Z+1/4	DNA clamp	Interaction Interface Pymol
e2ijxA2	B:x,y,z->A:X,Y,Z	DNA clamp	Interaction Interface Pymol
e2ijxA2	B:x,y,z->A:Y,X,-Z-3	DNA clamp	Interaction Interface Pymol
e2ijxD1	B:x,y,z->D:X-1,Y,Z	DNA clamp	Interaction Interface Pymol
e2ijxC2	B:x,y,z->C:Y,X-1,-Z-3	DNA clamp	Interaction Interface Pymol
e2ijxB1	B:x,y,z->B:Y,X,-Z-3	DNA clamp	Interaction Interface Pymol
e2ijxB1	B:Y,X,-Z-3->B:x,y,z	DNA clamp	Interaction Interface Pymol