Domain ID e2j28J1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L13/L15p/L18e/L32e
  • H: Ribosomal protein L13 and L16-A
  • T: Ribosomal protein L13 and L16-A
  • F: Ribosomal_L13
UID: 000118775
Type: Automatic domain
Parent: e4v19N1
Range: J:1-140
Ligands: MG
PDB: 2j28
PDB Description: 50S RIBOSOMAL PROTEIN L13
UniProt: P0AA10
Hsap BLAST neighbor: Q9BYD1
Species: Escherichia coli

Structure of domain e2j28J1

Domains in the same chain:

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e2j28J1 J:1-140 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A

Domains in the same PDB:

e2j2801 0:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2j2811 1:1-54 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2j2821 2:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e2j2831 3:1-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e2j2841 4:1-38 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e2j2895 9:2-90 Domain of the SRP/SRP receptor G proteins-like Domain of the SRP/SRP receptor G-proteins Domain of the SRP/SRP receptor G-proteins
e2j2894 9:91-299 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2j2896 9:300-431 HTH HTH tri-helical
e2j28C3 C:3-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2j28C4 C:125-269 SH3 SH3 SH3
e2j28D1 D:1-209 cradle loop barrel RIFT-related Alanine racemase-C
e2j28E2 E:1-201 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e2j28F1 F:1-178 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e2j28G2 G:1-81 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2j28G1 G:82-170 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2j28H2 H:1-52 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e2j28H3 H:56-149 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e2j28I3 I:1-73 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e2j28I4 I:74-141 HTH HTH Ribosomal protein L11, C-terminal domain
e2j28J1 J:1-140 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e2j28K1 K:2-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e2j28L1 L:1-144 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e2j28M1 M:1-136 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e2j28N1 N:14-117 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e2j28O1 O:1-117 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2j28P1 P:1-114 SH3 SH3 SH3
e2j28Q1 Q:1-117 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e2j28R1 R:1-103 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e2j28S1 S:1-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e2j28T1 T:6-99 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e2j28U1 U:3-101 SH3 SH3 SH3
e2j28V1 V:1-94 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e2j28W1 W:1-84 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2j28X1 X:1-60 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e2j28Y1 Y:1-58 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e2j28Z1 Z:1-70 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p

Structural contacts of domain e2j28J1 of H-group "Ribosomal protein L13 and L16-A":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4v19N1 J:x,y,z->Q:X,Y,Z Ribosomal protein L13 and L16-A Interaction Interface Pymol
e2j28R1 J:x,y,z->R:X,Y,Z Ribosomal protein L21p Interaction Interface Pymol
e2j28R1 J:X,Y,Z->D:x,y,z Ribosomal protein L21p Interaction Interface Pymol