Domain ID e2jdiD3

Download files:
  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: ATP-synt_ab
UID: 000009667
Type: Manual and representative domain
Range: D:82-357
Ligands: ANP MG
PDB: 2jdi
PDB Description: ATP SYNTHASE SUBUNIT BETA
UniProt: P00829
Hsap BLAST neighbor: P06576
Species: Bos taurus

Structure of domain e2jdiD3

Domains in the same chain:

Download Pymol

e2jdiD1 D:10-81 cradle loop barrel RIFT-related Alanine racemase-C
e2jdiD3 D:82-357 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2jdiD2 D:358-475 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase

Domains in the same PDB:

e2jdiA1 A:24-94 cradle loop barrel RIFT-related Alanine racemase-C
e2jdiA3 A:95-379 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2jdiA2 A:380-510 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e2jdiB1 B:24-94 cradle loop barrel RIFT-related Alanine racemase-C
e2jdiB3 B:95-379 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2jdiB2 B:380-510 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e2jdiC1 C:24-94 cradle loop barrel RIFT-related Alanine racemase-C
e2jdiC3 C:95-379 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2jdiC2 C:380-510 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e2jdiD1 D:10-81 cradle loop barrel RIFT-related Alanine racemase-C
e2jdiD3 D:82-357 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2jdiD2 D:358-475 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e2jdiE1 E:10-81 cradle loop barrel RIFT-related Alanine racemase-C
e2jdiE2 E:82-357 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2jdiE3 E:358-474 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e2jdiF1 F:10-81 cradle loop barrel RIFT-related Alanine racemase-C
e2jdiF2 F:82-357 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2jdiF3 F:358-474 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e2jdiG1 G:1-47,G:67-173,G:206-272 ATP synthase (F1-ATPase), gamma subunit ATP synthase (F1-ATPase), gamma subunit ATP synthase (F1-ATPase), gamma subunit
e2jdiH1 H:17-101 Epsilon subunit of F1F0-ATP synthase-N Epsilon subunit of F1F0-ATP synthase-N Epsilon subunit of F1F0-ATP synthase-N
e2jdiH2 H:102-145 Long alpha-hairpin Epsilon subunit of F1F0-ATP synthase C-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain

Structural contacts of domain e2jdiD3 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2jdiC3 D:x,y,z->C:X,Y,Z P-loop domains-related Interaction Interface Pymol
e2jdiC2 D:x,y,z->C:X,Y,Z C-terminal domain of alpha and beta subunits of F1 ATP synthase Interaction Interface Pymol
e2jdiA3 D:x,y,z->A:X,Y,Z P-loop domains-related Interaction Interface Pymol
e2jdiA1 D:x,y,z->A:X,Y,Z RIFT-related Interaction Interface Pymol
e2jdiG1 D:X,Y,Z->G:x,y,z ATP synthase (F1-ATPase), gamma subunit Interaction Interface Pymol
e2jdiA1 D:X-1/2,-Y+3/2,-Z+1->A:x,y,z RIFT-related Interaction Interface Pymol
e2jdiE2 D:X-1,Y,Z->E:x,y,z P-loop domains-related Interaction Interface Pymol