Domain ID e2jguA5

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: DNA_pol_B
UID: 001710805
Type: Automatic domain
Parent: e1tgoA4
Range: A:348-448,A:503-611
PDB: 2jgu
PDB Description: DNA POLYMERASE
UniProt: P61875
Species: Pyrococcus furiosus

Structure of domain e2jguA5

Domains in the same chain:

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e2jguA2 A:1-34,A:115-133 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2jguA3 A:35-114 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e2jguA1 A:134-347 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2jguA5 A:348-448,A:503-611 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2jguA4 A:449-502 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2jguA6 A:612-704,A:729-758 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e2jguA2 A:1-34,A:115-133 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2jguA3 A:35-114 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e2jguA1 A:134-347 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2jguA5 A:348-448,A:503-611 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2jguA4 A:449-502 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2jguA6 A:612-704,A:729-758 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e2jguA5 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2jguA5 A:x,y,z->A:-X,Y,-Z-1 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e2jguA4 A:x,y,z->A:-X,Y,-Z-1 "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e2jguA4 A:-X,Y,-Z-1->A:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e2jguA5 A:-X,Y,-Z-1->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e2jguA1 A:X-1/2,Y+1/2,Z->A:x,y,z Ribonuclease H-like Interaction Interface Pymol