ECOD: domain e2kodA1

Domain ID e2kodA1

A: alpha bundles
X: Retrovirus capsid protein
H: Retrovirus capsid protein-C
T: Retrovirus capsid protein-C
F: Gag_p24_C

UID:	000378089
Type:	Automatic domain
Parent:	e1a8oA1
Range:	A:144-231
PDB:	2kod
PDB Description:	HIV-1 CA C-TERMINAL DOMAIN
UniProt:	P04585
Hsap BLAST neighbor:	P63128
Species:

Domain
In chain context
In PDB context

Structure of domain e2kodA1

Domains in the same chain:

Download Pymol

e2kodA1	A:144-231	Retrovirus capsid protein	Retrovirus capsid protein-C	Retrovirus capsid protein-C

Domains in the same PDB:

e2kodA1	A:144-231	Retrovirus capsid protein	Retrovirus capsid protein-C	Retrovirus capsid protein-C
e2kodB1	B:144-231	Retrovirus capsid protein	Retrovirus capsid protein-C	Retrovirus capsid protein-C

Structural contacts of domain e2kodA1 of H-group "Retrovirus capsid protein-C":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2kodB1	A:x,y,z->B:X,Y,Z	Retrovirus capsid protein-C	Interaction Interface Pymol