ECOD: domain e2ny0A2

Domain ID e2ny0A2

A: a+b two layers
X: gp120 inner domain
H: gp120 inner domain
T: gp120 inner domain
F: GP120

UID:	001829624
Type:	Automatic domain
Parent:	e2nxyA3
Range:	A:83-255,A:474-491
Ligands:	NAG
PDB:	2ny0
PDB Description:	ENVELOPE GLYCOPROTEIN GP120
UniProt:	P19551
Species:	Human immunodeficiency virus 1

Domain
In chain context
In PDB context

Structure of domain e2ny0A2

Domains in the same chain:

Download Pymol

e2ny0A2	A:83-255,A:474-491	gp120 inner domain	gp120 inner domain	gp120 inner domain
e2ny0A1	A:256-473	Ribosomal protein L31e-like	Ribosomal protein L31e/gp120 outer domain	Ribosomal protein L31e/gp120 outer domain

Domains in the same PDB:

e2ny0A2	A:83-255,A:474-491	gp120 inner domain	gp120 inner domain	gp120 inner domain
e2ny0A1	A:256-473	Ribosomal protein L31e-like	Ribosomal protein L31e/gp120 outer domain	Ribosomal protein L31e/gp120 outer domain
e2ny0B1	B:1001-1097	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2ny0B2	B:1098-1181	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2ny0C1	C:2001-2109	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2ny0C2	C:2110-2214	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2ny0D1	D:3001-3128	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2ny0D2	D:3129-3229	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e2ny0A2 of H-group "gp120 inner domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2ny0B1	A:x,y,z->B:X,Y,Z	Immunoglobulin-related	Interaction Interface Pymol
e2ny0D1	A:X,Y,Z->D:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e2ny0D2	A:x,y,z->D:X,Y-1,Z	Immunoglobulin-related	Interaction Interface Pymol
e2ny0C1	A:X,Y,Z->C:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e2ny0C1	A:X,-Y,-Z+1->C:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e2ny0A2	A:x,y,z->A:X,-Y-1,-Z+1	gp120 inner domain	Interaction Interface Pymol
e2ny0A2	A:X,-Y-1,-Z+1->A:x,y,z	gp120 inner domain	Interaction Interface Pymol