Domain ID e2o1sB1

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  • A: a/b three-layered sandwiches
  • X: Thiamin diphosphate-binding fold (THDP-binding)
  • H: Thiamin diphosphate-binding fold (THDP-binding)
  • T: Thiamin diphosphate-binding fold (THDP-binding)
  • F: DXP_synthase_N
UID: 001116042
Type: Automatic domain
Parent: e8a45A2
Range: B:8-181,B:242-283
Ligands: DPO MG
PDB: 2o1s
PDB Description: 1-deoxy-D-xylulose-5-phosphate synthase
UniProt: P77488
Species: Escherichia coli

Structure of domain e2o1sB1

Domains in the same chain:

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e2o1sB1 B:8-181,B:242-283 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2o1sB4 B:319-490 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2o1sB5 B:491-621 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like

Domains in the same PDB:

e2o1sA3 A:3-182,A:239-291 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2o1sA4 A:318-490 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2o1sA5 A:491-620 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2o1sB1 B:8-181,B:242-283 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2o1sB4 B:319-490 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2o1sB5 B:491-621 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2o1sC3 C:3-182,C:240-291 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2o1sC4 C:318-490 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2o1sC5 C:491-621 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2o1sD5 D:9-90,D:113-181,D:241-283 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2o1sD4 D:319-490 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2o1sD6 D:491-621 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like

Structural contacts of domain e2o1sB1 of H-group "Thiamin diphosphate-binding fold (THDP-binding)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2o1sA4 B:x,y,z->A:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2o1sA4 B:x,y,z->A:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2o1sC5 B:-X+1,Y-1/2,-Z+1->C:x,y,z TK C-terminal domain-like Interaction Interface Pymol